PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G10060.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family CPP
Protein Properties Length: 455aa    MW: 49950.6 Da    PI: 6.5657
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G10060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR223.2e-0738621742
              TCR 17 YCeCfaagkkCseeCkCedCkNkeek 42
                     YCeCfaa+++C+  C+C++C N++e+
  LPERR02G10060.1 38 YCECFAARVYCDG-CHCSSCGNNNEN 62
                     *************.********9975 PP
2TCR50.15.6e-16107146140
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      k++kgC+Ckks+ClkkYCeCf+a+  Cs++C C+dCkN e
  LPERR02G10060.1 107 KHNKGCHCKKSECLKKYCECFQANILCSKNCGCQDCKNFE 146
                      589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163429.33719147IPR005172CRC domain
PfamPF036381.0E-43859IPR005172CRC domain
SMARTSM011140.533862IPR033467Tesmin/TSO1-like CXC domain
SMARTSM011141.9E-17107148IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.2E-12110145IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MPNVGSGSAP MALPPPQQQK KKTVPTQRQW PMAFIPPYCE CFAARVYCDG CHCSSCGNNN  60
ENENIRKEAI EALLLRNPLA FQPKIENGPN AVNVRKDNSG AVPAIPKHNK GCHCKKSECL  120
KKYCECFQAN ILCSKNCGCQ DCKNFEGSQE RQALIQMNNA SDRNHIHEAA QFATNGAIGS  180
LGYRSSPVCG KKSQENSHGE QIMSEPQFQL ADHSDVSQLT PSCIGFGGDQ SKSSKMIYRS  240
PLVNTIPLIE VNDLVKHVLV ACRKATEAFP TKADNKVEMQ TEKQSQSNDE INNDKNKEQN  300
LKEAFVKDTQ DEASTDQQNI NERGPHLDNG SKDSRPASPG TQALMCDEQD TTFGNDYRNP  360
FVVPSGDQGI SELNADQEKI VLTGLREYLR VLITRGNINA TKSSSEAAME LDSRRHHGAT  420
TVFSQDNSMS SNCPETLGNN QTSMSNDEQK GKSVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-203815725133Protein lin-54 homolog
5fd3_B4e-203815725133Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G10060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126101e-123CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623618.10.0protein tesmin/TSO1-like CXC 5
TrEMBLA0A0D9VEP80.0A0A0D9VEP8_9ORYZ; Uncharacterized protein
STRINGLPERR02G10060.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-73Tesmin/TSO1-like CXC domain-containing protein