PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G09400.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 382aa    MW: 39703.2 Da    PI: 8.0598
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G09400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-13114164255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++h  +Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  LPERR02G09400.1 114 KMSHITVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 164
                      789*************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.066112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-17113190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12114166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.28E-13114168No hitNo description
PfamPF000101.0E-10114164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-11118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MADGGLCELF SDDRDIRQHV ADADLFRILE TWEECINGAA GGAANSAAAA CAGGGAGGAA  60
RTTAGNGRRR EAGRDEEKGG GGAPAQKKHK GSSSSSSSPA TAAAIGEEEG GAGKMSHITV  120
ERNRRKQMNE HLAVLRSLMP CFYVKRGDQA SIIGGVVDYI KELQQVLRSL ETKKNRKAYA  180
VDQVLSPRPP PPPPPPLIKS MPPISPRLAA GAVPISPRTP TPGSPYKPPP PPSAAFRPPS  240
YCSVSSPAMT PTTSCSSSTT THELSPAPAP FLPILDSLVT ELAARAAAGR APSVLGGGGG  300
VVLPEVKVEF AGANLVVKTV SQRAPGQALK IIAALERLSL EILHVSITTL DDTTVLSFTI  360
KIGIDCELSA EELVQEIQQT FL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G09400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624375.21e-147transcription factor SPEECHLESS
TrEMBLA0A0D9VEF60.0A0A0D9VEF6_9ORYZ; Uncharacterized protein
STRINGLPERR02G09400.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.13e-35bHLH family protein