PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G08660.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 518aa    MW: 56556.4 Da    PI: 6.3332
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G08660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.91.7e-31117170255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+
  LPERR02G08660.1 117 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 170
                      8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-29113171IPR009057Homeodomain-like
PROSITE profilePS5129412.601113173IPR017930Myb domain
SuperFamilySSF466895.02E-14116171IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-22117172IPR006447Myb domain, plants
PfamPF002499.0E-9118169IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MKDKEVVEIE DDETKRSVDK NQLDLNELVM DVESEEGEVG DDEDDDDEED DDDDGGSTTD  60
VAGSRSSSNN SSTNNNVSES KLKGCEKDGV GGDAEGNNNG GEHRIPSVRQ YNRSKLPRLR  120
WTPDLHMAFV HAVERLGGQE RATPKLVLQM MNVRGLSIAH VKSHLQMYRS KKLDHEGRQI  180
RGAIASVFSP MDFHMMRGDR RFHDMLLQRA AALSSRPDHG GFFPPRTGGG GGGLPEASRL  240
YGLLQHRQPP MSQTFDFKNT SFRNQEWSFS FNQCDMSSRR EMKPSSSTTA TPPAHLLAAS  300
SSAIRRWPSF ADGAGDQISR PEAGRFGYYT GNGTSFRTLI TRAAMAPPPA TMSGGDRRLP  360
FVWHGGDGGG GAKINRSSSD PVVIDEALDS RSLEHHQMKL IEPRSCTPST TPAGKRPPPD  420
LQLSLSPTTT ASAAKRSKTT ATTTSAAAGE QQQEAEMDRC NNSKLSISLS LSPPAPAANN  480
SMDLSSMHHH HQQQEKTRGS SSEEDADLGQ TRVCIYFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-18118172357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-18118172357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-18118172357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-18118172357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G08660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648492.11e-164PREDICTED: uncharacterized protein LOC102717409
TrEMBLA0A0D9VE680.0A0A0D9VE68_9ORYZ; Uncharacterized protein
STRINGLPERR02G08660.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27543686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.17e-35G2-like family protein