PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G08270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 182aa MW: 18962.1 Da PI: 9.8703 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.3 | 5e-07 | 16 | 70 | 6 | 53 |
HHHHHHHHHHHHHHHHHHHCTSCCC.........TTS-.STCHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkas......kapskK.lsKaeiLekAveYIks 53 + +Er+RR+++N +++L +l+ + s ++++ + + L +A eYI+ LPERR02G08270.1 16 KTVERNRRNQMNALYSRLDSLVRSGSgsapppPGGGPSaTTRPDRLGEAAEYIRR 70 679********************97779999955555569999999999999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.511 | 10 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-6 | 15 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.4E-7 | 16 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MDAAGAGGNG GKPDRKTVER NRRNQMNALY SRLDSLVRSG SGSAPPPPGG GPSATTRPDR 60 LGEAAEYIRR TEERVGILRE RKRELTGSAG SSAAEAAEVE VQHLGSGLHA ILVTGAPPPP 120 PGDGGSFHRA VRAVEEAGGE VHNAHFSLVG AKAIYTIHAR VGEGYGGIET VVQRVKEAIR 180 SN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G08270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798292.1 | 2e-71 | transcription factor bHLH162-like isoform X1 | ||||
TrEMBL | A0A0D9VE22 | 1e-125 | A0A0D9VE22_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G08270.1 | 1e-125 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11987 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 1e-16 | bHLH family protein |