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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
LPERR02G06340.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
C2H2 |
| Protein Properties |
Length: 253aa MW: 27981.6 Da PI: 9.3461 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR02G06340.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14.1 | 0.00014 | 134 | 150 | 1 | 17 |
EEETTTTEEESSHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLk 17
++Cp C k+F+r nL+
LPERR02G06340.1 134 FSCPVCRKTFNRYNNLQ 150
89**********99996 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 253 aa
Download sequence Send
to blast |
MEESEAQTNL ISRGHGHGHC QEHEPMKKPF PFLSLISSSS SCSSSQHQQD DHGGHGRLLL 60
CRKQQLQEEE EDATVALRIG LPVISSSSSS PAMANQDDVK HGGSLRTTTA ATGGGGGQYW 120
IPTAAQILAG ATQFSCPVCR KTFNRYNNLQ PTAMLRLPCY CCAAGCRNHI DHPRARPLKD 180
FRTLQTHYRR RHGARVFACA RCAKRFAVRG DWRTHEKNCG RLWRCACGAE FRHKRSLNDH 240
ARAFGAGHGH GVL
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
| UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK108729 | 1e-117 | AK108729.1 Oryza sativa Japonica Group cDNA clone:002-150-D01, full insert sequence. |
| GenBank | AP004184 | 1e-117 | AP004184.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1225_F07. |
| GenBank | AP004191 | 1e-117 | AP004191.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1524_D08. |
| GenBank | AP014958 | 1e-117 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
