 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
LPERR02G06230.2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
C3H |
| Protein Properties |
Length: 308aa MW: 31607.9 Da PI: 10.1391 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR02G06230.2 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 24.1 | 6.5e-08 | 109 | 134 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+lC+ + Ck Gd+C+FaHg+
LPERR02G06230.2 109 KTRLCNKYNTAEGCKWGDKCHFAHGE 134
8***********************96 PP
|
| 2 | zf-CCCH | 34.7 | 2.9e-11 | 274 | 299 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC +f + G C +GdrC+FaHg+
LPERR02G06230.2 274 FKTKLCENFTK-GSCTFGDRCHFAHGE 299
69*********.*************96 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 1.3 | 41 | 68 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.333 | 41 | 69 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 7.06E-6 | 42 | 68 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.2E-6 | 43 | 67 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.7E-14 | 104 | 139 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.09E-8 | 106 | 138 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.075 | 107 | 135 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.069 | 107 | 134 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.3E-5 | 109 | 134 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 1.25E-14 | 168 | 248 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 6.7E-10 | 177 | 247 | IPR004087 | K Homology domain |
| Gene3D | G3DSA:3.30.1370.10 | 5.8E-15 | 178 | 246 | IPR004088 | K Homology domain, type 1 |
| PROSITE profile | PS50084 | 14.76 | 178 | 242 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 2.21E-13 | 180 | 242 | No hit | No description |
| Pfam | PF00013 | 3.9E-11 | 180 | 244 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:4.10.1000.10 | 1.8E-16 | 271 | 304 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 6.2E-8 | 273 | 299 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.58E-9 | 273 | 303 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 17.009 | 273 | 300 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.9E-9 | 274 | 299 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 308 aa
Download sequence Send
to blast |
MEGGGGGAGA GRKRGKPDGG TNGAAGGKRA RESESFQTGV GSKSKPCTKF FSTSGCPFGE 60
GCHFLHHFPG GYQAVAKMTN LGGPALAPPP VRMPMGAAVP DGPPTPTVKT RLCNKYNTAE 120
GCKWGDKCHF AHGERELGKP MLMDSSMPPP MGPRPTGHFA PPPMPNPGMS TPASFGASAT 180
AKISVDASLA GAIIGRGGVN TKQISRVTGA KLAIRDHESD ANLKNIELEG TFDQIKNASA 240
MVRELIVSIG GGAPPQGKKP AGGSHRGGGP GSNFKTKLCE NFTKGSCTFG DRCHFAHGEN 300
ELRKSAAA
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK242341 | 0.0 | AK242341.1 Oryza sativa Japonica Group cDNA, clone: J075199P17, full insert sequence. |
