PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR02G04950.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bZIP

Protein Properties

Length: 294aa MW: 31113.6 Da PI: 5.0052

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR02G04950.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	52.5	1e-16	140	191	4	55
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +kr rr+ +NRe+ArrsR+RK+a ++ Le+ v++L +eN +L k+l+ +++ LPERR02G04950.1 140 VKRMRRMVSNRESARRSRKRKQAHLADLETQVDQLRGENASLFKQLNDANQT 191 79*****************************************888876665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.6E-17	137	201	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.047	139	190	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-14	140	189	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.0E-13	140	192	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.0E-12	141	190	No hit	No description
CDD	cd14702	3.03E-23	142	192	No hit	No description
PROSITE pattern	PS00036	0	144	159	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071333	Biological Process	cellular response to glucose stimulus
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MKKCPSELDF AAFLGEDDAG AGAEQKPGGG GQQPPFAMFS AADLSGFGAL ADSVTSTITG 60 GIPNHIWPQS QSLNARHPVV STTIESQSSI CAAASPTSAT TLTMKESQTL GGTSGSDSDS 120 DSLLDTEGGP CEQSTNPLDV KRMRRMVSNR ESARRSRKRK QAHLADLETQ VDQLRGENAS 180 LFKQLNDANQ TFTTAVTDNR ILKSDVEALR VKVKMAEDMV ARGALSCGLG HHLGGLSPVL 240 NPRQACRVPD VLTGLDFPGD DAFTGLSPPE QVQMPEVIDA GWNWDSHSNG GMSK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	159	RRSRKRK
2	153	160	RRSRKRKQ
3	155	160	SRKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:7919992}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR02G04950.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070674	0.0	AK070674.1 Oryza sativa Japonica Group cDNA clone:J023063K11, full insert sequence.
GenBank	RICRITA1A	0.0	L34551.1 Oryza sativa transcriptional activator protein (RITA-1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015688882.1	1e-170	PREDICTED: basic leucine zipper 9-like isoform X1
Swissprot	Q6ETX0	1e-170	RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
TrEMBL	A0A0D9VCT4	0.0	A0A0D9VCT4_9ORYZ; Uncharacterized protein
STRING	LPERR02G04950.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2095	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	5e-39	basic leucine zipper 9

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development. Plant Cell, 1994. 6(9): p. 1277-87 [PMID:7919992]