PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G04650.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NF-YC
Protein Properties Length: 352aa    MW: 38819.7 Da    PI: 5.0771
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G04650.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.11.7e-551752791102
            NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      ql+ fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi+df
  LPERR02G04650.2 175 QLREFWANQmeeIEQTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDIYDF 268
                      89******9777789******************************************************************************* PP

            NF-YC  92 lvdivprdelk 102
                      lvdivprde+k
  LPERR02G04650.2 269 LVDIVPRDEMK 279
                      ********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.84E-33149269IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.8E-37189261IPR009072Histone-fold
PfamPF008081.4E-20197260IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDTTPTCTHQ AHVLVSLSLL ALTLLLPRVV LTEGDLVSSL SLRRRELDCS SRVESRREGS  60
AAWGGEPSTR ASVLRAGDPA VSRVFGSGRT RPDMEPSSQP QPVMGVAAGG SQAYPPGAAY  120
PPQGMVPGAP AVVPPGSQPS APFPTNPAQL SAQHQLVYQQ AQQFHQQLQQ QQQQQLREFW  180
ANQMEEIEQT TDFKNHTLPL ARIKKIMKAD EDVRMISAEA PVVFAKACEV FILELTLRSW  240
MHTEENKRRT LQKNDIAAAI TRTDIYDFLV DIVPRDEMKE EGLGLPRVGL PPNMGAAADT  300
YPYYYVPPQQ GPGSGMMYGG QQGHPVTYVW QQPQEQQDEP PEEQQQSLPE SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B5e-57183275395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247253RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G04650.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2434290.0AK243429.1 Oryza sativa Japonica Group cDNA, clone: J100067L16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646944.11e-144PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_015689486.11e-144PREDICTED: nuclear transcription factor Y subunit C-2
SwissprotQ655V51e-126NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLA0A0D9VCP80.0A0A0D9VCP8_9ORYZ; Uncharacterized protein
STRINGLPERR02G04650.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-69nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]