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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
LPERR02G03890.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
Whirly |
| Protein Properties |
Length: 275aa MW: 30458.8 Da PI: 11.0643 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR02G03890.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 182 | 1.1e-56 | 99 | 236 | 2 | 139 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95
v+k+kaal++++++p+f++l+sg +++++G++++++ +a+++rkyd++kkq fals+tev++l++l++ esceffhdp++k+s+eG+v+k+l+
LPERR02G03890.1 99 VFKGKAALSMHPILPSFSKLESGGSRVNKNGSVMMTFFPAVGQRKYDYSKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKSLS 192
9********************************************************************************************* PP
Whirly 96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
v Pl + sG+f+n++v n+++k+ e++s+P++kaef+v+r++l+
LPERR02G03890.1 193 VTPLGNDSGYFLNITVLNNVQKTTERLSLPITKAEFTVMRTALS 236
*****************************************985 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 275 aa
Download sequence Send
to blast |
MRRLSRHKRR VSWCSLSPSS LPFHSLAALA TQRNASARSG GRKAKAMMQR LSRFAPSSSR 60
RVTDLKDALW SGSLTFQHAL STFAPDENTS GRKFASYTVF KGKAALSMHP ILPSFSKLES 120
GGSRVNKNGS VMMTFFPAVG QRKYDYSKKQ LFALSPTEVG SLISLGPAES CEFFHDPSMK 180
SSHEGQVKKS LSVTPLGNDS GYFLNITVLN NVQKTTERLS LPITKAEFTV MRTALSFALP 240
HILGWDQALT VDHPRPSSAS KPRVERPHPD SEWER
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4kop_A | 3e-72 | 90 | 247 | 8 | 165 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_B | 3e-72 | 90 | 247 | 8 | 165 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_C | 3e-72 | 90 | 247 | 8 | 165 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_D | 3e-72 | 90 | 247 | 8 | 165 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK061569 | 0.0 | AK061569.1 Oryza sativa Japonica Group cDNA clone:006-311-F08, full insert sequence. |
| GenBank | AK099479 | 0.0 | AK099479.1 Oryza sativa Japonica Group cDNA clone:J013025B22, full insert sequence. |
| GenBank | AK104768 | 0.0 | AK104768.1 Oryza sativa Japonica Group cDNA clone:001-039-A03, full insert sequence. |
| GenBank | CT828510 | 0.0 | CT828510.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129J03, full insert sequence. |
