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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G03850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 200aa MW: 20435.8 Da PI: 5.7996 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59 | 1.1e-18 | 21 | 71 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +gr++AeIrdp k++ ++lg+f++ae Aa+a++aa+++l+g+ LPERR02G03850.1 21 RYRGVRRRP-SGRYAAEIRDPA---KKTPIWLGTFDSAEAAARAYDAAARSLRGA 71 69*******.7*********83...36*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.53E-14 | 21 | 77 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.9E-29 | 21 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.36E-21 | 21 | 79 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.9E-12 | 21 | 70 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.076 | 21 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.1E-34 | 21 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.4E-8 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.4E-8 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MRRARLPPAP TPAMVGEGEV RYRGVRRRPS GRYAAEIRDP AKKTPIWLGT FDSAEAAARA 60 YDAAARSLRG AAARTNFPPT SPPPPPPQQL PPSAAAAAAA TSSHSSTVES WGATAPALAA 120 VSVRGGGAMG AADEDCRSYC GSSSSVLCED GASGAGDEAA APRCSPLPFD LNLPAPAPAV 180 AAAADADDEM DWRCDTLLHL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-19 | 15 | 78 | 8 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G03850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287559 | 7e-80 | AK287559.1 Oryza sativa Japonica Group cDNA, clone: J065023L05, full insert sequence. | |||
GenBank | AP004843 | 7e-80 | AP004843.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1103G11. | |||
GenBank | AP004871 | 7e-80 | AP004871.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0419H03. | |||
GenBank | AP014958 | 7e-80 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623823.1 | 2e-68 | ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A0D9VCE2 | 1e-136 | A0A0D9VCE2_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G03850.1 | 1e-136 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6102 | 23 | 47 |