PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

HD-ZIP

Protein Properties

Length: 251aa MW: 26716.4 Da PI: 8.2325

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR02G03410.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	8e-19	135	189	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++++eq + Lee F ++ +s++++ eLA klgL+ rqV vWFqNrRa+ k LPERR02G03410.1 135 RKKLRLSREQATLLEESFSAHNILSHAQKHELAGKLGLSARQVEVWFQNRRARTK 189 788899***********************************************98 PP
2	HD-ZIP_I/II	114.5	6.6e-37	135	223	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rls+eq++lLEesF++++ L++ +K+ela +Lgl++rqv+vWFqnrRARtk+kq+E d+e L+r++++l++en+rL+++ ++Lr+ LPERR02G03410.1 135 RKKLRLSREQATLLEESFSAHNILSHAQKHELAGKLGLSARQVEVWFQNRRARTKLKQTEADCEILRRWCERLADENARLRHDLADLRS 223 69***********************************************************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.232	131	191	IPR001356	Homeobox domain
SMART	SM00389	4.4E-14	133	195	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.43E-18	134	200	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.9E-18	135	196	IPR009057	Homeodomain-like
CDD	cd00086	3.50E-13	135	192	No hit	No description
Pfam	PF00046	3.6E-16	135	189	IPR001356	Homeobox domain
PRINTS	PR00031	3.0E-6	162	171	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	166	189	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.0E-6	171	187	IPR000047	Helix-turn-helix motif
SMART	SM00340	1.7E-11	191	234	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	6.2E-7	191	223	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MTSSSSLTTT TTSSNMEADS AVEFSDTRLS LAIGCSPSAP PPPPAAEQRR AVVLFGELFP 60 APPRESSSPA TAAAGGHTIS VGKRDQRGET AATTRNNSSS KKARTAVRGG GGDDDDGVDR 120 WSPSGGGGDD EGANRKKLRL SREQATLLEE SFSAHNILSH AQKHELAGKL GLSARQVEVW 180 FQNRRARTKL KQTEADCEIL RRWCERLADE NARLRHDLAD LRSSSFYSSL SAAAVCSSCA 240 GAAAGEDTRR Q

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	183	191	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR02G03410.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624893.1	2e-66	putative homeobox-leucine zipper protein HOX26
Swissprot	Q67UX6	2e-67	HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26
TrEMBL	A0A0D9VC95	0.0	A0A0D9VC95_9ORYZ; Uncharacterized protein
STRING	LPERR02G03410.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8315	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	4e-34	homeobox-leucine zipper protein 3