PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G03100.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ARF
Protein Properties Length: 1028aa    MW: 114239 Da    PI: 6.1899
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G03100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3665.6e-21122223199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d + ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+    ++
  LPERR02G03100.1 122 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDIHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIVV--RD 211
                      99*****************************954.4444.49**********************************************99..55 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  LPERR02G03100.1 212 EKHQLLLGIRRA 223
                      788889999997 PP
2Auxin_resp117.89.3e-39248331183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+++s+F+++YnPras++eFv++++k++kal+ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  LPERR02G03100.1 248 AAHAAANSSPFTIFYNPRASPTEFVIPFAKYQKALYsNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 331
                      79*********************************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.16E-41111251IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-39114237IPR015300DNA-binding pseudobarrel domain
CDDcd100177.89E-18121222No hitNo description
PfamPF023629.8E-19122223IPR003340B3 DNA binding domain
PROSITE profilePS5086310.912122224IPR003340B3 DNA binding domain
SMARTSM010196.7E-21122224IPR003340B3 DNA binding domain
PfamPF065071.3E-33248331IPR010525Auxin response factor
PfamPF023095.8E-9892980IPR033389AUX/IAA domain
PROSITE profilePS5174528.457895979IPR000270PB1 domain
SuperFamilySSF542773.27E-7913974No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1028 aa     Download sequence    Send to blast
MWRLAVAERT KAPAMNSELW HACAGPLVSL PPVGSLVVYF PQGHSEQVAA SMQKDVDAHV  60
PSYPNLPSKL ICLLHGVNLH ADPDTDEVYA QMTLQPVNTY GKEALQLSEL ALKQARPQME  120
FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDFSMQPPAQ ELQARDIHDN VWTFRHIYRG  180
QPKRHLLTTG WSLFVSGKRL FAGDSVIVVR DEKHQLLLGI RRANRQPTNI SSSVLSSDSM  240
HIGVLAAAAH AAANSSPFTI FYNPRASPTE FVIPFAKYQK ALYSNQISLG MRFRMMFETE  300
ELGTRRYMGT ITGISDLDPV RWKNSQWRNL QVGWDESAAG ERRNRVSIWE IEPVAAPFFL  360
CPQPFFGVKR PRQLDDESEM ENLFKRAMPW LGEEVCIKDA QNQNSTAPGL SLVQWMNMNR  420
QQSSSIANTS AQSEYLQALG NPAMQNLSAD DLARQLYVQN NLLQQNCIQF NSPKLPPQMQ  480
TMNDLSKAAI PLNQLGAIIN PQDQKQDAVN HQRQQNSIQV IPLSQAQSNL VQAQMQILQK  540
LQQQSLMTQS TSTLSQPALI QEQQKLLIDM QKQLSNSHSF AQQQMMTQQE SKPTLQATSL  600
ISTIQQEQQQ KLLQKQVSLA EVSEVAFQPI SSTNVIPKTG GAMIISGATQ SALTEEIPSC  660
STSPSTANAN QLAQSTKNRY YINTEKVQQS TAPMLIPTSI DAVTATPLMT KELPKPNNSA  720
KQSVINSKLP NVAPGTQNCM NNALQTDTLE TSSSATSLCP SRTDGLVHQG FPSSNFNQHQ  780
MFKDALPDVE IECVDPSNSG LFGINNDNPL GFPIETEDLL INALDSVKYQ NHMSTDVENN  840
YLIQKDALQE ISTSMVSQSF GQSDMAFNSI DSAINDGALL NKNSWPAAPP LQRMRTFTKV  900
YKRGAVGRSI DIGRYSGYDE LKHALARMFG IEGQLEDRQR IGWKLVYKDH EDDILLLGDD  960
PWEEFVHCVR CIRILSPQEV QQMSLDGDLG SNVLPNQACS SSDGVNGWKP RCDQNSGNPS  1020
IGPYDQFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1671035246388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G03100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052940.0AP005294.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1679_B08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403032.10.0PREDICTED: auxin response factor 19-like isoform X2
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A0D9VC450.0A0A0D9VC45_9ORYZ; Auxin response factor
STRINGLPERR02G03100.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19