 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
LPERR02G02980.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
SBP |
| Protein Properties |
Length: 475aa MW: 50865.6 Da PI: 9.1747 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR02G02980.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 131.6 | 2.8e-41 | 185 | 261 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
CqvegC++dls+ak yhr+h+vCe hsk+p+v+v+gle+rfCqqCsrfh l+efD++k+sCrrrL++hn+rrrk+q+
LPERR02G02980.1 185 CQVEGCNVDLSSAKPYHRKHRVCEPHSKTPKVIVAGLERRFCQQCSRFHGLNEFDQKKKSCRRRLNDHNARRRKPQP 261
**************************************************************************997 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
| GO:0048653 | Biological Process | anther development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 475 aa
Download sequence Send
to blast |
MGSFGMDWNQ KSSVLWDWEN MLPVGNNTNE NPKNVMQAES KLAGVGVDIG HESAHSSGGT 60
FSSSSEIGYG SSKSSISVSI DSPSKVGNTI ELNFASVKEP GRNMGKGKEL CKVDDTGTSR 120
SPVVAASQAE PLIGLKLGKR TYFEDVCGGQ NVKGSPSSGV SVATPSPGQA KKAKVAQQNA 180
SNTYCQVEGC NVDLSSAKPY HRKHRVCEPH SKTPKVIVAG LERRFCQQCS RFHGLNEFDQ 240
KKKSCRRRLN DHNARRRKPQ PEAISLSSSR LSTILYGDAR QQTGLLFGQA PYGQMGSYAS 300
SLWDNPAPGG FKFTATKAPW SKPTRAAGVD GTRVSNHQAS SNVLPHEPHH SFDSLMAFKE 360
TNAKVLNQGM EASAVASSSA GGPDFERALS PLSINSVGAA NLQPGSQMHP GVTAIAGTSN 420
PAMMPSPAIW QGNLSLDQQA QFQAFDRLSN DDTAAPHQLQ LPKPSYDNSH YDQMN
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 240 | 257 | KKKSCRRRLNDHNARRRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK242984 | 0.0 | AK242984.1 Oryza sativa Japonica Group cDNA, clone: J090094N03, full insert sequence. |
