PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR02G01320.2

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bHLH

Protein Properties

Length: 465aa MW: 49356.6 Da PI: 4.3163

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR02G01320.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.6	9.6e-08	288	312	7	30
HHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 7 erErrRRdriNsafeeLrellPk.a 30 e+Er+RR+++N+ + +Lr+l+P+ LPERR02G01320.2 288 EAERKRRKKLNDHLYKLRSLVPNiT 312 89********************955 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	4.0E-7	82	148	IPR025610	Transcription factor MYC/MYB N-terminal
SuperFamily	SSF47459	2.09E-7	280	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.45E-6	280	314	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.6E-6	288	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-5	288	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009555	Biological Process	pollen development
GO:0048657	Biological Process	anther wall tapetum cell differentiation
GO:0000978	Molecular Function	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MGGGDHLLMK SSNAAAAVNG GGTSLDAALR PLVGSDGWDY CIYWRLSPDQ RFLEMMGFCC 60 SSELEAQVSA LCDLPSSIQL DSSSIGMHAQ ALLSNQPIWQ SISQQQEEDA DAAVAGAKTR 120 LLVPVAGGLV ELFASRFMAE DQQMAELVMA QCGGGVAGAG EDDGGVQAWP PPPPVPETPG 180 FQWDGVADAQ RMMYGGGSSS LNLFDGDAAV AGDQFLAGGG EAAAGWQYAA AVSEPSVAVQ 240 EQMHGGGGGG GESGSEGREM NGGGGGDGEE DGEGRSGGAK RQQCKNLEAE RKRRKKLNDH 300 LYKLRSLVPN ITKDLQDELE DNHNPHAGGG DMSKPPDVLI DHPPPASLVG LDNDADAASP 360 PNNSHHNHHK EKQHRMEPQL EVRQVHGNEM FVQILWEPKP GEAGFVRLME AMDALSLHVI 420 NVRDNEAAPV QADRVRDSLL EVTREPYPPG LWSPSPPEEQ DDPQL

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MGGGDHLLMK SSNAAAAVNG GGTSLDAALR PLVGSDGWDY CIYWRLSPDQ RFLEMMGFCC  60
SSELEAQVSA LCDLPSSIQL DSSSIGMHAQ ALLSNQPIWQ SISQQQEEDA DAAVAGAKTR  120
LLVPVAGGLV ELFASRFMAE DQQMAELVMA QCGGGVAGAG EDDGGVQAWP PPPPVPETPG  180
FQWDGVADAQ RMMYGGGSSS LNLFDGDAAV AGDQFLAGGG EAAAGWQYAA AVSEPSVAVQ  240
EQMHGGGGGG GESGSEGREM NGGGGGDGEE DGEGRSGGAK RQQCKNLEAE RKRRKKLNDH  300
LYKLRSLVPN ITKDLQDELE DNHNPHAGGG DMSKPPDVLI DHPPPASLVG LDNDADAASP  360
PNNSHHNHHK EKQHRMEPQL EVRQVHGNEM FVQILWEPKP GEAGFVRLME AMDALSLHVI  420
NVRDNEAAPV QADRVRDSLL EVTREPYPPG LWSPSPPEEQ DDPQL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	289	296	ERKRRKKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269\|PubMed:17138695, ECO:0000269\|PubMed:19825565, ECO:0000269\|PubMed:23385589}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR02G01320.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK119580	1e-146	AK119580.1 Oryza sativa Japonica Group cDNA clone:002-117-B12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015625730.1	0.0	transcription factor TDR
Refseq	XP_025878930.1	0.0	transcription factor TDR
Refseq	XP_025878931.1	0.0	transcription factor TDR
Swissprot	Q6YUS3	0.0	TDR_ORYSJ; Transcription factor TDR
TrEMBL	A0A0D9VBG5	0.0	A0A0D9VBG5_9ORYZ; Uncharacterized protein
STRING	LPERR02G01320.2	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5530	34	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	5e-28	bHLH family protein

Publications ? help Back to Top
Endo M, et al. High temperatures cause male sterility in rice plants with transcriptional alterations during pollen development. Plant Cell Physiol., 2009. 50(11): p. 1911-22 [PMID:19808807] Xu J,Wu M,He C [Identification and functional analysis of Tdrxoo, the member of TonB-dependent-receptor family proteins in Xanthomonas oryzae pv. oryzae]. Wei Sheng Wu Xue Bao, 2010. 50(2): p. 155-61 [PMID:20387456] Liu Z,Bao W,Liang W,Yin J,Zhang D Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development. J Integr Plant Biol, 2010. 52(7): p. 670-8 [PMID:20590996] Zhang D, et al. OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice. Plant Physiol., 2010. 154(1): p. 149-62 [PMID:20610705] Senapati PK,Behera S Experimental investigation on an entrained flow type biomass gasification system using coconut coir dust as powdery biomass feedstock. Bioresour. Technol., 2012. 117: p. 99-106 [PMID:22613886] Zhang SR,Dong DM,Zheng WG,Zhao XD,Wang JH [Laser-induced fluorescence spectroscopy characterization of farmland soil moisture content]. Guang Pu Xue Yu Guang Pu Fen Xi, 2012. 32(10): p. 2623-7 [PMID:23285852] Li L, et al. An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development. Planta, 2015. 241(1): p. 157-66 [PMID:25236969] Yi J, et al. Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration. Plant Physiol., 2016. 170(3): p. 1611-23 [PMID:26697896]