PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G39910.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 392aa    MW: 43035.5 Da    PI: 4.9067
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G39910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.22.6e-31156212258
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                      dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+ver+ +dp+++ +tYeg H h
  LPERR01G39910.1 156 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCNAKKQVERCLDDPDTLLVTYEGLHLH 212
                      8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.267150215IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-29151213IPR003657WRKY domain
SuperFamilySSF1182901.7E-26153213IPR003657WRKY domain
SMARTSM007741.9E-36155214IPR003657WRKY domain
PfamPF031067.9E-25156212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MESSGEYWRD DVDAGQELLR ELLDETAAAQ YNSNSNSNSN SNSKEEEEEE EVALAAEDEQ  60
QQQHQVGAPY CRRRESMVNK LISTVYSGPT ISDIENALSF TGAGAGDHRL LADVHNYTNA  120
SCSPVVFSPE KTLSKSMENK YTLKMKSCGS NGGLADDGYK WRKYGQKSIK NSPNPRSYYR  180
CTNPRCNAKK QVERCLDDPD TLLVTYEGLH LHYTYSHFLH SSSTHNNHQQ QPQQLQFGST  240
NCKKKPKLHL HDDPPLPDQL PPPAADMADM NSMIMHMSCF SQQQLTSDRI MTMDDCYSSS  300
SSLMTSLDVD AGAGGLLEDV VPLLVRRPMI ISSCNNTNNC SPATTCTSDN DGGGSSSASA  360
SPSPSISSSV SSWNTCTPMS PCIDMAILSN IF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-191542121674Probable WRKY transcription factor 4
2lex_A7e-191542121674Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G39910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646737.21e-136PREDICTED: WRKY transcription factor SUSIBA2
TrEMBLA0A0D9VAV50.0A0A0D9VAV5_9ORYZ; Uncharacterized protein
STRINGLPERR01G39910.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75253551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-42WRKY DNA-binding protein 49