PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G38150.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 456aa    MW: 49436.1 Da    PI: 6.5738
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G38150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS399.53.4e-122604511374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lLl+cA a ssg l +a+a+L+++ +la+pdgd+mqR+aa f+eALa+r +r +++l++ l   ++s  + +e++aa++ f +++P+l+++
  LPERR01G38150.1  60 LIHLLLNCAAAASSGRLDAANAALEHIATLAAPDGDAMQRVAAAFAEALARRALRAWPGLCRGLLLPRSS-PTPAESAAARRHFLDLCPFLRLA 152
                      689***********************************************************99555554.36899999*************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                        +aNq Ile++e+e+ vH+iD++  +   +QW+ Ll+ La+Rpegpp+lR+T v++    +k+ l++ +  L+k Ae+l++pf+fn+ v++ l
  LPERR01G38150.1 153 GAAANQSILESMESEKIVHVIDLGgaADGAAQWVELLHLLAARPEGPPHLRLTSVHP----HKDLLSQSAMALTKEAERLDIPFQFNP-VVSPL 241
                      ***********************84345568**************************....9**************************.7**** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrll......................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258
                      ++l+le+Lrvk+gEalaV ++lqlh+ll                      +   +++s++d++L ++++lsPkv+v++eqea+hns+++ erf+
  LPERR01G38150.1 242 DSLDLESLRVKTGEALAVFSSLQLHSLLatdddstittvaagekdrrspeSGISPSTSRTDAFLTAIWGLSPKVFVITEQEASHNSGNLTERFV 335
                      *********************************************999653333344489********************************** PP

             GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                      eal+yy+alfd+le++++r s er+ vEr +lg+ei+n+vac g errerhe+l +W +r+e aGF+ vpls++a  qa+++ +  + dg++v 
  LPERR01G38150.1 336 EALNYYAALFDCLESGAARGSVERARVERWMLGEEIKNIVACDGGERRERHERLDRWARRMEGAGFGRVPLSYYALLQARRVAQGLGCDGFKVR 429
                      ********************************************************************************************** PP

             GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                      ee+gs++l+W+dr+L+svSaWr
  LPERR01G38150.1 430 EEKGSFFLCWHDRALFSVSAWR 451
                      *********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.17134431IPR005202Transcription factor GRAS
PfamPF035141.2E-11960451IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MVQDEGSSSS VTSSPLQNFS NMPLHPLAAA AAAASSPATA TPAPPWMMRE LRSDERGLCL  60
IHLLLNCAAA ASSGRLDAAN AALEHIATLA APDGDAMQRV AAAFAEALAR RALRAWPGLC  120
RGLLLPRSSP TPAESAAARR HFLDLCPFLR LAGAAANQSI LESMESEKIV HVIDLGGAAD  180
GAAQWVELLH LLAARPEGPP HLRLTSVHPH KDLLSQSAMA LTKEAERLDI PFQFNPVVSP  240
LDSLDLESLR VKTGEALAVF SSLQLHSLLA TDDDSTITTV AAGEKDRRSP ESGISPSTSR  300
TDAFLTAIWG LSPKVFVITE QEASHNSGNL TERFVEALNY YAALFDCLES GAARGSVERA  360
RVERWMLGEE IKNIVACDGG ERRERHERLD RWARRMEGAG FGRVPLSYYA LLQARRVAQG  420
LGCDGFKVRE EKGSFFLCWH DRALFSVSAW RGRRFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-59434531380Protein SCARECROW
5b3h_D5e-59434531380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G38150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165765.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-163SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A0D9VA700.0A0A0D9VA70_9ORYZ; Uncharacterized protein
STRINGLPERR01G38150.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-145scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]