PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G36700.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family SBP
Protein Properties Length: 378aa    MW: 40200.6 Da    PI: 8.7921
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G36700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.27.2e-4159136278
                      -SSTT-----TT-.-HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   2 CqvegCeadlsea.keyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      C vegC+adls++ ++yhrrhkvCe+h+k+pvv+v+g++qrfCqqCsrfh l efDeekrsCr+rL++hn+rrrk+q+
  LPERR01G36700.1  59 CSVEGCAADLSKCsRDYHRRHKVCEAHAKTPVVTVAGQQQRFCQQCSRFHLLGEFDEEKRSCRKRLDGHNKRRRKPQP 136
                      ************8799***********************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.9E-3351121IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.87256134IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-3757139IPR004333Transcription factor, SBP-box
PfamPF031109.3E-3059133IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDWDAKMPSW DLGTVVGPSS SAGGALDLKL GAPTSWKTAA ASAAATRARA GQQAAVPACS  60
VEGCAADLSK CSRDYHRRHK VCEAHAKTPV VTVAGQQQRF CQQCSRFHLL GEFDEEKRSC  120
RKRLDGHNKR RRKPQPDPLN PNSLFANHHG AARFTSYQQI FSTASMSTQE AKWPVKTEVA  180
DVFQEPFYHH HHAALHLNGG AGAVFQGGKG TRKHQFPFLT ADHGDASPFG CQQPFTITPS  240
SESRSSSGSR HSNNNNGGGK MFAHDGGLDN CALSLLSDNP TPAAAAAITT IPQPLGIQYA  300
GNGDVSLTGL SYVGKNTPIL AKSAIATTPT VSAAATTTAN VAATQLQYHH GYYHHHHVNA  360
DQGSSDAAAI QALPFSSW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-27591331184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116133KRSCRKRLDGHNKRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G36700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0625811e-104AK062581.1 Oryza sativa Japonica Group cDNA clone:001-100-B10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611358.11e-164squamosa promoter-binding-like protein 2
SwissprotQ0JGI11e-165SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBLA0A0D9V9N60.0A0A0D9V9N6_9ORYZ; Uncharacterized protein
STRINGLPERR01G36700.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104563038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-30SBP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]