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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR01G36330.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
C3H |
Protein Properties |
Length: 437aa MW: 47671 Da PI: 8.6611 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR01G36330.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 31.6 | 2.7e-10 | 75 | 100 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
++++ C +++rtG C++G +C+F+H+
LPERR01G36330.1 75 PGEPDCTYYLRTGLCRFGMSCRFNHP 100
5789*********************8 PP
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2 | zf-CCCH | 39 | 1.4e-12 | 121 | 146 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
++++C+++++tGtCk+G++CkF+H++
LPERR01G36330.1 121 GQPECQYYLKTGTCKFGPTCKFHHPR 146
5799********************96 PP
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3 | zf-CCCH | 36.5 | 8.1e-12 | 168 | 192 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+++C+++ +tG+CkyG++CkF+H++
LPERR01G36330.1 168 EKECSYYIKTGQCKYGNTCKFHHPE 192
679********************96 PP
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4 | zf-CCCH | 39.3 | 1.1e-12 | 329 | 354 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
++++C+++++tG Ck+G+ CkF+H++
LPERR01G36330.1 329 DQPECQYYMKTGDCKFGAVCKFHHPR 354
689*********************96 PP
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5 | zf-CCCH | 41.4 | 2.4e-13 | 378 | 402 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
++elC+f++r+G+Ck+G++CkF H+
LPERR01G36330.1 378 GEELCKFYSRYGICKFGANCKFDHP 402
78**********************9 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50103 | 14.54 | 74 | 102 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-4 | 74 | 101 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.1E-8 | 76 | 100 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-5 | 79 | 102 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.3E-4 | 80 | 100 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.986 | 119 | 147 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-5 | 119 | 146 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.9E-10 | 121 | 146 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-6 | 122 | 148 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.8E-5 | 125 | 147 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-6 | 165 | 192 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.671 | 165 | 193 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.5E-5 | 165 | 192 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-8 | 168 | 192 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-5 | 171 | 191 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.023 | 327 | 355 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.9E-5 | 327 | 354 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-9 | 329 | 354 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-5 | 330 | 354 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-4 | 333 | 353 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.094 | 376 | 404 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-6 | 376 | 402 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.8E-6 | 376 | 403 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-10 | 378 | 402 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-5 | 380 | 401 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 437 aa
Download sequence Send
to blast |
MDDAAPAVVT VTASAAAPPP PPPPPPPPPP SQLPATAATD APSPDPAALY GEGMWQQMAM 60 GGSGTTQPGP YPERPGEPDC TYYLRTGLCR FGMSCRFNHP SDRNLAIASA RMKGEYPERM 120 GQPECQYYLK TGTCKFGPTC KFHHPREKAG IAGRVQLNTL GYPLRPNEKE CSYYIKTGQC 180 KYGNTCKFHH PELFNAMASS RGSPIYPSVH SSATAGPPSY TGTMASWAFP RGSYIQSPRW 240 QNPSNYAPMI VPQGLVQVSS WNSYPGQMLP VSSSESRLQS PGAQQTYGTS QQVDASASNQ 300 GMLSPYRSSS YPVPQYALQR ENVFPERPDQ PECQYYMKTG DCKFGAVCKF HHPRVRSMPP 360 PDCLLSPVGL PLRPIFQGEE LCKFYSRYGI CKFGANCKFD HPTVAPPMGV YAYGSTSANV 420 PMVRRLLQSP SPSAYTS
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK098948 | 0.0 | AK098948.1 Oryza sativa Japonica Group cDNA clone:J013050D10, full insert sequence. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Deng H,Liu H,Li X,Xiao J,Wang S
A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease. Plant Physiol., 2012. 158(2): p. 876-89 [PMID:22158700]
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