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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G35880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | B3 | ||||||||
Protein Properties | Length: 746aa MW: 77771.2 Da PI: 5.8649 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.9 | 4.4e-19 | 559 | 655 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 +kvl++sdv+++gr+vlpkk ae h ++k++ ++t+ +ed ++++W++k+++ ++ks++y+l+ ++ +Fv++n+L+egDf+v++ ++ ++ LPERR01G35880.1 559 QKVLKQSDVGSLGRIVLPKKEAEIHmpELKTRDGITIPMEDiGTSQVWNMKYRFwpNNKSRMYLLE-NTGDFVRSNELQEGDFIVIY--SDiKS 649 79********************999**999***********7777*******99777777777777.********************..66688 PP E..EEE CS B3 90 felvvk 95 ++++++ LPERR01G35880.1 650 GKYLIR 655 877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.8E-27 | 550 | 664 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10015 | 1.02E-30 | 556 | 657 | No hit | No description |
SuperFamily | SSF101936 | 1.31E-21 | 557 | 652 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 5.2E-18 | 558 | 660 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.165 | 558 | 660 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-15 | 559 | 654 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009657 | Biological Process | plastid organization | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 746 aa Download sequence Send to blast |
MDASAAGSSA THSHGKQGGG GGGGGGRGKA PAAEIRGGAA RGDDFLFAAA DDTFPNLPDF 60 PCLSSPSSST FSSSSSSSNS SSAFTTAAGG GGGGVTGGEP SEPASAADGF DDLADIDQLL 120 DLASLSVPWD VAEPLFPDDD VGMMMEDAIS PQPPHHQVDG GGEDGAAEYC NTGDEKAVVE 180 SPVGGGDACM AAEEDQAPDD LPGFFMEWLT SNREYISADD LRSIRLRRST IEAAAERLGG 240 GRQGTMQLLK LILTWVQNHH LQNKKRPRTA MDEAAAAAAS SEPSPGYEFP SSGAQEMASA 300 AAGTSWMPYA FTAAPPAYGG EAATAMYQPY NFQQSCSTSS VVVSTQPFSP PTAPPAAAAA 360 AADMHAWPPQ QFGPFAGSST GSYTMPSVVP PPFTAGFAGQ YSGMCSPRLA AGGAVEPSAT 420 KEARKKRMAR QRRLSCLQQQ RSQQINLSQI QISGHPQEPC PRAANSAPVT PSSVGWGGIW 480 STPAAGQIMQ NPLSNRPINN PNPSPTPAKQ QKPSPQEKPK PKPKPAAAQE ESSQQSPSSE 540 KRQGGTKSTA DKNLRFLLQK VLKQSDVGSL GRIVLPKKEA EIHMPELKTR DGITIPMEDI 600 GTSQVWNMKY RFWPNNKSRM YLLENTGDFV RSNELQEGDF IVIYSDIKSG KYLIRGVKVR 660 RAPQEQGNNS SGAVGKHKNG CPEKAGVSDT KAGEGEVDGG SVDGAAAGGG GGKPDGGACK 720 DKSPHGVRRS RQEAAAASMN QMAVSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 4e-38 | 554 | 666 | 1 | 110 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 4e-38 | 554 | 666 | 1 | 110 | B3 domain-containing transcription factor FUS3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may participate in abscisic acid-regulated gene expression during seed development. May be required for seed maturation and dormancy induction. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00083 | PBM | Transfer from AT3G24650 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G35880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006645206.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein VP1 | ||||
Swissprot | P37398 | 0.0 | VIV_ORYSJ; B3 domain-containing protein VP1 | ||||
TrEMBL | A0A0D9V9D1 | 0.0 | A0A0D9V9D1_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G35880.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7529 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 9e-59 | B3 family protein |