PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G35650.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 1247aa    MW: 137835 Da    PI: 9.1001
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G35650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00111511173323
                       ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                       Cp   Cgk F ++ +L +H ++H
  LPERR01G35650.1 1151 CPvkGCGKKFFSHKYLLQHRKVH 1173
                       9999*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005454.1E-142667IPR003349JmjN domain
PROSITE profilePS5118313.9382768IPR003349JmjN domain
PfamPF023751.3E-132861IPR003349JmjN domain
SMARTSM005584.4E-21198339IPR003347JmjC domain
PROSITE profilePS5118426.275201339IPR003347JmjC domain
SuperFamilySSF511971.9E-12212333No hitNo description
PfamPF023736.1E-19231316IPR003347JmjC domain
SMARTSM003552011261148IPR015880Zinc finger, C2H2-like
SMARTSM003550.6211491173IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.61211491178IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.8E-611511177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028011511173IPR007087Zinc finger, C2H2
SuperFamilySSF576671.36E-911651205No hitNo description
Gene3DG3DSA:3.30.160.607.7E-811781203IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.05311791208IPR007087Zinc finger, C2H2
SMARTSM003550.02311791203IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028011811203IPR007087Zinc finger, C2H2
SuperFamilySSF576671.7E-711971232No hitNo description
Gene3DG3DSA:3.30.160.604.2E-812041232IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.212091235IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.67912091240IPR007087Zinc finger, C2H2
PROSITE patternPS00028012111235IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 1247 aa     Download sequence    Send to blast
MRPSPPPAAP PAAAEPVPPW LKSLPLAPEF HPTAAEFADP VAYILKIEPA AAPYGICKVV  60
PPFPPPPKNS TLSNLSRSFA ALHPDDPTPS FPTRHQQVGL CPRSARRLGV KPVWRSSRRY  120
TLPEFESKAG TSRKSLLARL NVAASKQLAP LDYEVLFWRA AADRPVVVEY GSDMPGSGFS  180
PRVKTQPPPP PQSRAAAHVG ETAWNLRAAA RSPGSVLQFM REDVPGVTTP MLYVGMMFSW  240
FAWHVEDHDL HSLNYMHLGA GKTWYGVPRD AALAFEDVVR EHGYGGEVNP VGSFATLGQK  300
TTVVSPEVLV ESGFNCGEAS NIATPEWLRV AKEAAIRRAS VNCPPMLSHY QLLYEHALST  360
RFREPSNETR SSRLKEKKKC EGEQLVKKMF IRNVIEDNEL LSHLLNDGSC IIFPAIAHDG  420
PVLSALSSRY QSKMTSRISH DLCSREEAPE ALGSLTLSRT GHAGNTHSIQ GDKGDTISTT  480
GLLDQGLLSC VTCGIISFSC VAVLKPRDCT ARYLMSADSN SINNQLSVSG GSTLADALTN  540
KGNGVISRPY SEQCCNKIKS DDAEIDRKSA LDLLAFAYGD QSGPEEDPLK KILKVAHNPD  600
ELLRGINESQ PNSSSNVGCV GTKLSSSSTE CLERPSSQNA NCIGSSVIST RPKGVRTRNK  660
YQLKMILSEG FQAKDMHSAK EKKDQSEQSS SKGIVKETVD VSCIENVAGC NSTKISVSEH  720
RGSTKDIYSA KEKKVLSESS SLKGTIKDTV DVSGSENDAR CNKTTISVGD HRDSTPTINS  780
LATSIMKPDK DSSRMHVFCL EHAIEVQKQL HAIEYPKIEA EARLLAEEMR VEYDWKDIHF  840
KEANMEDKQK MQEVLQDEEV IPTSSDWAVK LGINLYYSAN LAKSPLYNKQ MPYNRVISRA  900
FGCNSPNSSP VKFITCERRQ THQKKIAVAG RWCGKVWTSK QVHPYLAHRV ESQEVEEEDK  960
IWSYRLDEKH RAEPVGNSSR AEASKRKRSS LTEVTESSNR REEIPGEETN TKKPKHSEED  1020
NLRGLGSAAG VVAPSSAGIA LRNSSRIANR ARADKLKSKM EEEDGPYNHP KSNIKETSSH  1080
ASGQKSNIQE NANSASHSRA RPPKQKTEAE ANKQTTPKAP KQAVEYSCDI EGCTMSFRTK  1140
RDLSLHKSDI CPVKGCGKKF FSHKYLLQHR KVHTDDRPLL CPWEGCNMAF KWPWARTEHL  1200
RVHTGDRPYV CHEPGCALTF RFVSDFSRHK RKTGHSGKKK KKKKARS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A7e-591126124323140Lysine-specific demethylase REF6
6a58_A7e-591126124323140Lysine-specific demethylase REF6
6a59_A7e-591126124323140Lysine-specific demethylase REF6
6ip0_A1e-54203588351Transcription factor jumonji (Jmj) family protein
6ip4_A1e-54203588351Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
112291243KRKTGHSGKKKKKKK
212371243KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G35650.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0689520.0AK068952.1 Oryza sativa Japonica Group cDNA clone:J023001N18, full insert sequence.
GenBankAP0033800.0AP003380.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0497A05.
GenBankAP0065310.0AP006531.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1417F08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621377.10.0lysine-specific demethylase JMJ705
SwissprotQ5N7120.0JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A0D9V9A00.0A0A0D9V9A0_9ORYZ; Uncharacterized protein
STRINGLPERR01G35650.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53463246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-158relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]