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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G35620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 359aa MW: 38161.2 Da PI: 6.0732 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 33.6 | 5.1e-11 | 9 | 62 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT...SEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst...gklyeyss 51 k ie++ +r+ t+ +Rr g+ K + +LC++++ ++ ++s+ g++ +++s LPERR01G35620.1 9 KLIESEKKRKATYKNRRDGLVQKVSQFATLCGVDAFLVCYGSDvagGEVTTWPS 62 569**************************************9877799999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.3E-6 | 1 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.4 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.32E-15 | 3 | 83 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.60E-16 | 3 | 81 | No hit | No description |
Pfam | PF00319 | 3.8E-13 | 11 | 60 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MPRTKLVLKL IESEKKRKAT YKNRRDGLVQ KVSQFATLCG VDAFLVCYGS DVAGGEVTTW 60 PSDRATVVER IEKLRALRPE KIRQVHTTGS LLREDLAKQQ RALIKVQQCG VYDILMPSSG 120 YRFDELSLDG LNALYDALSV TLEMAHRRMA TLRCGGGGDV VVGGHDDDDA SSSAALVAVP 180 APAPYAVALP DHNSAVGPFD FPFVDAAHYY YPVLHDTMPM PLPVYHHLPS SCLSYPMPPP 240 PPPLAAAAFD QGFMDSSSLY AAANVVHGGA GLGNPLLDDH SHGFAAGVGY GDDLLAHGFA 300 IAAGAGAGYD LDPRMSAADV WQMNAISNPN DGVAFQLQND LKGILPGGGN SGSNLRAGF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G35620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D9V995 | 0.0 | A0A0D9V995_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G35620.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14351 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 2e-16 | M-type_MADS family protein |