PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G35540.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 534aa    MW: 59475.8 Da    PI: 5.0964
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G35540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.71.4e-104655282996
                      -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      kk+  k l+l+d+s r W v ++ + k ++  + +GW +  ++n+L egD++vF+l +  ++el ++v
  LPERR01G35540.1 465 KKQARKILILKDPSMRLWPVLYQCTPKFNG--FITGWADISRENNLHEGDTCVFELCS--KTELSFQV 528
                      44556789**************55555555..557********************875..44455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-71475IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-41471IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-14436529IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-12436532IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.377437532IPR003340B3 DNA binding domain
CDDcd100179.14E-11451528No hitNo description
PfamPF023621.2E-8465526IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MDRASSSEKS SPMPTIPSFF KIMVGYFSET MDIPLPFART ITDLEGSIIY LEDAFGLRWR  60
VWLCLRDGVL HLVMGGRTLC SITTSALASS WQIARSVFTV QIFGISACER MHHCEKNKRQ  120
SRKMKPSQKT DYPANNQMVK MWINVERNNA PNRDMIWVPA NLNCLFMYVS TSSELRCSES  180
SAKELDVAAG ESHEVVEVPK RAANDCTTEC NATLLMADKE PARSHQDSPM QLYCALGLED  240
GNAATEDCED SKILENAEQR TPLATMDLNE ASIDDIFLSA DIYEFDSDFC SPEAFSFDLN  300
NEGLATNGQS SDIYFGMPAT STCLENKQMS DVPITSADGG SVTVHGIEIN VLPAWPDAYK  360
RVNIFCASLL RATKLQKKQD ILEDGPRQTA VEIMPSSPKT SELAELRKNS VQPGNNCEGQ  420
EKGRTKSLAI LAVAANNKKF CIAVPPLDQT WLELPRRLPV LPKTKKQARK ILILKDPSMR  480
LWPVLYQCTP KFNGFITGWA DISRENNLHE GDTCVFELCS KTELSFQVVA PNSQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G35540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646580.10.0PREDICTED: B3 domain-containing protein Os01g0905400-like
SwissprotQ5N6V00.0Y1054_ORYSJ; B3 domain-containing protein Os01g0905400
TrEMBLA0A0D9V9840.0A0A0D9V984_9ORYZ; Uncharacterized protein
STRINGLPERR01G35540.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114613240
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]