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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G34400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | C2H2 | ||||||||
Protein Properties | Length: 355aa MW: 38016.4 Da PI: 5.9497 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.2 | 6.3e-05 | 114 | 136 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+k+F+ + H+r+H LPERR01G34400.1 114 YPCRVCNKVFTGRKAVDGHMRVH 136 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.0015 | 114 | 136 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.0E-4 | 114 | 140 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.113 | 114 | 141 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.03E-5 | 114 | 141 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 116 | 136 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 19 | 227 | 251 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 229 | 251 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.1E-8 | 251 | 275 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 25 | 252 | 273 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 253 | 273 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MEDEASSSNG RRRCPYPWEE EEIEEGEIRR GGGGYYDSGS DTDDDGGGDV VVGEYKRRRV 60 DGLLSLRLPS PTPSSDSESE GTISDDGEEE EIIAGGAGDA APAAKQQQRV PFDYPCRVCN 120 KVFTGRKAVD GHMRVHQREK ISLPSHLPAA STGKRRRAMT VASFAPNSGE ARHGGNSMAI 180 VIAAEPALPV AAIAGGHHRH NALALMPGGG GAAARGVGRG GDRGPPYKCW YEGCNQEYIT 240 HQGLGGHGKK HRCKVCEAEF LTGVALGGHM RKHYEGNKKK KQQQEDDVDL TLTLAPPRQV 300 LAMPALPPPA AAEPKEEVLQ VEAEAEPTPE PEPEAAPMPA NGRRILRIFG VDIEI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 55 | 59 | KRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G34400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D9V8S5 | 0.0 | A0A0D9V8S5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G34400.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13928 | 12 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 3e-07 | C2H2 family protein |