![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR01G34250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 132aa MW: 14227 Da PI: 7.5134 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.1 | 3.4e-16 | 9 | 54 | 1 | 50 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 ++y+GVr+++ +g+Wv+eIr+p + r r +lg++ t+e Aa a++ ar LPERR01G34250.1 9 CRYRGVRRRR-WGKWVSEIRVPGT---RERLWLGSYATPEAAAVAHDTAR 54 78*****777.**********943...5*******************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.3E-9 | 9 | 54 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-20 | 10 | 57 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.123 | 10 | 68 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-17 | 10 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.71E-15 | 10 | 56 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.1E-9 | 11 | 22 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.31E-12 | 18 | 53 | No hit | No description |
PRINTS | PR00367 | 6.1E-9 | 33 | 49 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 132 aa Download sequence Send to blast |
MNGGEEERCR YRGVRRRRWG KWVSEIRVPG TRERLWLGSY ATPEAAAVAH DTARVASDAG 60 MAADAQLVAA REISASPSPT LPAPAAARHD RRDVAPPARH GMYANGAGIG GGEQRLVACA 120 EEISVDDMEI MM |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR01G34250.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 3e-53 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195624.1 | 2e-32 | ethylene-responsive transcription factor ERF020-like | ||||
TrEMBL | A0A0D9V8Q7 | 8e-89 | A0A0D9V8Q7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G34250.1 | 1e-89 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6433 | 29 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G71520.1 | 9e-12 | ERF family protein |