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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
LPERR01G34090.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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| Family |
NAC |
| Protein Properties |
Length: 357aa MW: 38384.6 Da PI: 9.0327 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR01G34090.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 165 | 2.7e-51 | 56 | 180 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
lppGfrFhPtdeelv++yL+++++g ++ + +i+e+d+yk++Pw+Lp+++ +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk+v s
LPERR01G34090.1 56 LPPGFRFHPTDEELVMHYLCRRCAGLPIAV-PIIAEIDLYKFDPWQLPRMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPVGS 148
79**************************99.88***************7666789*************************************99 PP
NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
+ v +kk Lvfy g+apkgekt+W+mheyrl
LPERR01G34090.1 149 --PKPVAIKKALVFYAGKAPKGEKTNWIMHEYRL 180
..789***************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009611 | Biological Process | response to wounding |
| GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 357 aa
Download sequence Send
to blast |
MPGSSPGTSF KPLLSSPYTS RITKASNDPS SSIAGERSDS PPELVKMSGG GQDLQLPPGF 60
RFHPTDEELV MHYLCRRCAG LPIAVPIIAE IDLYKFDPWQ LPRMALYGEK EWYFFSPRDR 120
KYPNGSRPNR AAGSGYWKAT GADKPVGSPK PVAIKKALVF YAGKAPKGEK TNWIMHEYRL 180
ADVDRSARKK NSLRLDDWVL CRIYNKKGGL EKPPASAAAT ASGGVIERKP MVMGINAAAA 240
VSSPPEQKPV VGVHGGGAPA FPDLAAYYDR PSDSMPRLHA DSSCSEQVLS PDQFACEVQS 300
QPKISEWERT FATAGPVNPA ASILDPTAGS GGFGGGGIGS AGDPLLQDIL MYWGKPF
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses (PubMed:20632034). Transcription activator involved in response to abiotic and biotic stresses. Involved in drought and salt stress responses, and defense response to the rice blast fungus (PubMed:17587305). Transcription activator involved tolerance to cold and salt stresses (PubMed:18273684). Transcription activator involved in tolerance to drought stress. Targets directly and activates genes involved in membrane modification, nicotianamine (NA) biosynthesis, glutathione relocation, accumulation of phosphoadenosine phosphosulfate and glycosylation in roots (PubMed:27892643). Controls root growth at early vegetative stage through chromatin modification and histone lysine deacytaltion by HDAC1 (PubMed:19453457). {ECO:0000269|PubMed:17587305, ECO:0000269|PubMed:18273684, ECO:0000269|PubMed:19453457, ECO:0000269|PubMed:20632034, ECO:0000269|PubMed:27892643}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by drought stress, salt stress, cold stress and abscisic acid (ABA) (PubMed:20632034, PubMed:27892643). Induced by methyl jasmonate (PubMed:20632034, PubMed:11332734). Induced by infection with the rice blast fungus Magnaporthe oryzae (PubMed:11332734). {ECO:0000269|PubMed:11332734, ECO:0000269|PubMed:20632034, ECO:0000269|PubMed:27892643}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB028185 | 0.0 | AB028185.1 Oryza sativa mRNA for OsNAC6 protein, complete cds. |
| GenBank | AK068392 | 0.0 | AK068392.1 Oryza sativa Japonica Group cDNA clone:J013149P14, full insert sequence. |
| GenBank | CT841730 | 0.0 | CT841730.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C102I24, full insert sequence. |
| GenBank | EU846993 | 0.0 | EU846993.1 Oryza sativa Japonica Group clone KCS089G05 NAC6 protein mRNA, complete cds. |
| Publications
? help Back to Top |
- Xiong L,Lee MW,Qi M,Yang Y
Identification of defense-related rice genes by suppression subtractive hybridization and differential screening.
Mol. Plant Microbe Interact., 2001. 14(5): p. 685-92
[PMID:11332734] - Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Ohnishi T, et al.
OsNAC6, a member of the NAC gene family, is induced by various stresses in rice.
Genes Genet. Syst., 2005. 80(2): p. 135-9
[PMID:16172526] - Hu H, et al.
Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice.
Plant Mol. Biol., 2008. 67(1-2): p. 169-81
[PMID:18273684] - Kim MJ, et al.
Quadruple 9-mer-based protein binding microarray with DsRed fusion protein.
BMC Mol. Biol., 2009. 10: p. 91
[PMID:19761621] - Chung PJ,Kim JK
Epigenetic interaction of OsHDAC1 with the OsNAC6 gene promoter regulates rice root growth.
Plant Signal Behav, 2009. 4(7): p. 675-7
[PMID:19820307] - Peng HF, et al.
Fine mapping of a gene for non-pollen type thermosensitive genic male sterility in rice (Oryza sativa L.).
Theor. Appl. Genet., 2010. 120(5): p. 1013-20
[PMID:20012261] - Takasaki H, et al.
The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
Mol. Genet. Genomics, 2010. 284(3): p. 173-83
[PMID:20632034] - Kim MJ, et al.
Convenient determination of protein-binding DNA sequences using quadruple 9-mer-based microarray and DsRed-monomer fusion protein.
Methods Mol. Biol., 2012. 786: p. 65-77
[PMID:21938620] - Gupta SK, et al.
The single functional blast resistance gene Pi54 activates a complex defence mechanism in rice.
J. Exp. Bot., 2012. 63(2): p. 757-72
[PMID:22058403] - Nakashima K, et al.
Comparative functional analysis of six drought-responsive promoters in transgenic rice.
Planta, 2014. 239(1): p. 47-60
[PMID:24062085] - Todaka D,Nakashima K,Shinozaki K,Yamaguchi-Shinozaki K
Toward understanding transcriptional regulatory networks in abiotic stress responses and tolerance in rice.
Rice (N Y), 2012. 5(1): p. 6
[PMID:24764506] - Qian B, et al.
Enhanced drought tolerance in transgenic rice over-expressing of maize C4 phosphoenolpyruvate carboxylase gene via NO and Ca(2+).
J. Plant Physiol., 2015. 175: p. 9-20
[PMID:25460871] - Shiriga K, et al.
Genome-wide identification and expression pattern of drought-responsive members of the NAC family in maize.
Meta Gene, 2014. 2: p. 407-17
[PMID:25606426] - Farooq MA,Detterbeck A,Clemens S,Dietz KJ
Silicon-induced reversibility of cadmium toxicity in rice.
J. Exp. Bot., 2016. 67(11): p. 3573-85
[PMID:27122572] - Lee DK, et al.
The rice OsNAC6 transcription factor orchestrates multiple molecular mechanisms involving root structural adaptions and nicotianamine biosynthesis for drought tolerance.
Plant Biotechnol. J., 2017. 15(6): p. 754-764
[PMID:27892643]
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