PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

C2H2

Protein Properties

Length: 517aa MW: 56929.8 Da PI: 5.3512

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G33350.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.8	2.2e-06	278	299	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H LPERR01G33350.2 278 FCLICGKGFKRDANLRMHMRGH 299 5*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.21E-5	275	302	No hit	No description
SMART	SM00355	0.012	277	299	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.552	277	304	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	279	299	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	7.3E-5	279	303	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	68	326	359	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	22	364	386	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010044	Biological Process	response to aluminum ion
GO:0010447	Biological Process	response to acidic pH
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence Send to blast
MDSSLRRSSE TSLKALPSVA RNTDPDQQGV RFNSMDQPYF ARPGQSFPAF PPLFGVQSSS 60 LYIPDDIEAK IGSQFESNPS LNNPTMDWDP QAMLSNLSFL EQKIKQVKDI VQSMSNRESQ 120 VAEGSSEVQA KQQLVTADLT CIIIQLISTA GSLLPSMKNP LSSNPALRHL SNTLGAPMVL 180 GTSCNQRPST NDEATIPDIT KTSEYEELMN TLNTTQDEGD EIMKCQNPCG GEGSEPVPME 240 DHDVKESDDG GEGENLPPGS YVVLQLEKEE ILAPHTHFCL ICGKGFKRDA NLRMHMRGHG 300 DEYKTPAALA KPSKDSSSEP APVTRYSCPY VGCKRNKEHK KFQPLKTILC VKNHYKRSHC 360 DKSYTCSRCN TKKFSVIADL KTHEKHCGRD KWICSCGTTF SRKDKLFGHV ALFQGHTPAL 420 PMDDIKLPGA SEQPQDSEAM NNMVGSVGYN FPGSSSDDIP NLDMKMADDP RYFSPLSFDP 480 CFGGLDDFTR PGFDISENPF SFLPSGSCSF GQQNGES

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence Send to blast

MDSSLRRSSE TSLKALPSVA RNTDPDQQGV RFNSMDQPYF ARPGQSFPAF PPLFGVQSSS  60
LYIPDDIEAK IGSQFESNPS LNNPTMDWDP QAMLSNLSFL EQKIKQVKDI VQSMSNRESQ  120
VAEGSSEVQA KQQLVTADLT CIIIQLISTA GSLLPSMKNP LSSNPALRHL SNTLGAPMVL  180
GTSCNQRPST NDEATIPDIT KTSEYEELMN TLNTTQDEGD EIMKCQNPCG GEGSEPVPME  240
DHDVKESDDG GEGENLPPGS YVVLQLEKEE ILAPHTHFCL ICGKGFKRDA NLRMHMRGHG  300
DEYKTPAALA KPSKDSSSEP APVTRYSCPY VGCKRNKEHK KFQPLKTILC VKNHYKRSHC  360
DKSYTCSRCN TKKFSVIADL KTHEKHCGRD KWICSCGTTF SRKDKLFGHV ALFQGHTPAL  420
PMDDIKLPGA SEQPQDSEAM NNMVGSVGYN FPGSSSDDIP NLDMKMADDP RYFSPLSFDP  480
CFGGLDDFTR PGFDISENPF SFLPSGSCSF GQQNGES

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00196	ampDAP	Transfer from AT1G34370	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G33350.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK119629	0.0	AK119629.1 Oryza sativa Japonica Group cDNA clone:002-130-C03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641300.1	0.0	zinc finger protein STOP1 homolog
Refseq	XP_015641307.1	0.0	zinc finger protein STOP1 homolog
Swissprot	Q943I6	0.0	STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBL	A0A0D9V8D1	0.0	A0A0D9V8D1_9ORYZ; Uncharacterized protein
STRING	LPERR01G33350.3	0.0	(Leersia perrieri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-160	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]