PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G32940.4
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 885aa    MW: 95396.9 Da    PI: 5.6888
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G32940.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000436887251355
                      HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R+ i +++ eLre++P++      K s  + Lek+++++  Lq
  LPERR01G32940.4 688 RQMIQDRIKELREIVPNS-----AKCSIDALLEKTIKHMLFLQ 725
                      77899************6.....5999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-318174IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000835.58E-4669726No hitNo description
PROSITE profilePS5088810.499675724IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-4688732IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 885 aa     Download sequence    Send to blast
MAAGASPLRD SLRRLCADVG WSYAVFWRAT RAADSQQLQL VWGDGHCEPE AGAPAISGFE  60
AMDLLLKEKA AALRSGAGRS GGGGGAAGHG QDRVEALVHK AMAQQVHVVG EGVIGQAALT  120
GLHRWILHDS LDECEEEDET VAVIPVLPQG VIQLGSTKMV MEEAAFIDHV RSLFQLLGSS  180
TAIVPCGSFV QDSIMKTLLL KSLGVTTSSH SEDHPAGGKT YNDDMINHQF RNQMSPASTI  240
QSFNPVHQFY AGPTFCRPVT IASRCDLFQS DSGSTFTLNS QSEDNNTSTV LPKNNVLNSQ  300
TSNDAFPHAF SPLNEPNITI SGRREPVSIE QHASCRNGEI EITKGCTASS SCAGDTNILN  360
KVNASLSRDR LVDCQTSNAT AVNRKFQTMS IVDNTKLQDG SCSPDAAFVD SARYSNCFQP  420
LLGTLHGSSS SNSNAVHVDT SHNGVPGVND FCPLRDRNIA NSSGLPELLM SPIPLELTGG  480
NDLFDVLQLQ HKQNSSNDSE ANNPVSVSYG SEQAVKSLIE CVDDDFAGLI TEADPDQLLD  540
AIASKIITGQ KQNVDTGASC SSSAASIDKP LHSDCHPYTT GASSGQIFYN FTSVSPVTIK  600
NKVTAEGFRQ SSSSKDKSEG CSQTEQSYKS QIRLWVENNN SMGSDSLSTG QASDSLSAGH  660
CKRNDEIGKS NRKRSRPGES ARPRPKDRQM IQDRIKELRE IVPNSAKCSI DALLEKTIKH  720
MLFLQNVAKH ADKLKESGEP KIVSQEEGLL LKDNFEGGAT WAFEVGTRSM TCPIIVEDLS  780
PPRQMLVEML CKERGIFLEI ADQIRGLGLT ILKGVMEVRK DKIWARFAVE ANKDVTRMEI  840
FLSLVHLLEP STGSSILSAG VENISLPRNS FFPSSIPATG FSNSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G32940.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680330.0AK068033.1 Oryza sativa Japonica Group cDNA clone:J013129B18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619837.10.0transcription factor LHW isoform X4
TrEMBLA0A0D9V8590.0A0A0D9V859_9ORYZ; Uncharacterized protein
STRINGLPERR01G32940.20.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.12e-54conserved peptide upstream open reading frame 7