PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G32940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 899aa MW: 96975.7 Da PI: 5.6026 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.9 | 0.00043 | 702 | 739 | 13 | 55 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLre++P++ K s + Lek+++++ Lq LPERR01G32940.1 702 RQMIQDRIKELREIVPNS-----AKCSIDALLEKTIKHMLFLQ 739 77899************6.....5999999********99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.0E-35 | 8 | 188 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 5.69E-4 | 683 | 740 | No hit | No description |
PROSITE profile | PS50888 | 10.499 | 689 | 738 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-4 | 702 | 743 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 899 aa Download sequence Send to blast |
MAAGASPLRD SLRRLCADVG WSYAVFWRAT RAADSQQLQL VWGDGHCEPE AGAPAISGFE 60 AMDLLLKEKA AALRSGAGRS GGGGGAAGHG QDRVEALVHK AMAQQVHVVG EGVIGQAALT 120 GLHRWILHDS LDECEEEDEV LLEMKDQFSA GMQTVAVIPV LPQGVIQLGS TKMVMEEAAF 180 IDHVRSLFQL LGSSTAIVPC GSFVQDSIMK TLLLKSLGVT TSSHSEDHPA GGKTYNDDMI 240 NHQFRNQMSP ASTIQSFNPV HQFYAGPTFC RPVTIASRCD LFQSDSGSTF TLNSQSEDNN 300 TSTVLPKNNV LNSQTSNDAF PHAFSPLNEP NITISGRREP VSIEQHASCR NGEIEITKGC 360 TASSSCAGDT NILNKVNASL SRDRLVDCQT SNATAVNRKF QTMSIVDNTK LQDGSCSPDA 420 AFVDSARYSN CFQPLLGTLH GSSSSNSNAV HVDTSHNGVP GVNDFCPLRD RNIANSSGLP 480 ELLMSPIPLE LTGGNDLFDV LQLQHKQNSS NDSEANNPVS VSYGSEQAVK SLIECVDDDF 540 AGLITEADPD QLLDAIASKI ITGQKQNVDT GASCSSSAAS IDKPLHSDCH PYTTGASSGQ 600 IFYNFTSVSP VTIKNKVTAE GFRQSSSSKD KSEGCSQTEQ SYKSQIRLWV ENNNSMGSDS 660 LSTGQASDSL SAGHCKRNDE IGKSNRKRSR PGESARPRPK DRQMIQDRIK ELREIVPNSA 720 KCSIDALLEK TIKHMLFLQN VAKHADKLKE SGEPKIVSQE EGLLLKDNFE GGATWAFEVG 780 TRSMTCPIIV EDLSPPRQML VEMLCKERGI FLEIADQIRG LGLTILKGVM EVRKDKIWAR 840 FAVEANKDVT RMEIFLSLVH LLEPSTGSSI LSAGVENISL PRNSFFPSSI PATGFSNSL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G32940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068033 | 0.0 | AK068033.1 Oryza sativa Japonica Group cDNA clone:J013129B18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619837.1 | 0.0 | transcription factor LHW isoform X4 | ||||
TrEMBL | A0A0D9V858 | 0.0 | A0A0D9V858_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G32940.2 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31280.1 | 1e-54 | conserved peptide upstream open reading frame 7 |