PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G31730.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 318aa    MW: 33828.5 Da    PI: 6.9293
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G31730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.45.3e-32134190258
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                       Dgy+WrKYGqK++k++++prsYY+Cts++C++kk+ve+s++dp+++++tYeg+H+h
  LPERR01G31730.1 134 ADGYKWRKYGQKSIKNNPHPRSYYKCTSSRCSAKKHVEKSTDDPDMFIVTYEGSHHH 190
                      6*******************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-31130191IPR003657WRKY domain
SuperFamilySSF1182901.05E-26131192IPR003657WRKY domain
SMARTSM007742.1E-35133192IPR003657WRKY domain
PfamPF031063.9E-26135190IPR003657WRKY domain
PROSITE profilePS5081128.311135193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGDARRPQAN ATTDEMGVVW PGGLDDQLIS ELLGDDGLVV PTAGPSAPAA SPCNRGGSST  60
AATAWPSPAP AVIRALCSVY SGPTIRDIEK ALSSTSSSLS SRPFPSSRRY SSLVVGVENK  120
HTSNVRSCGG KMPADGYKWR KYGQKSIKNN PHPRSYYKCT SSRCSAKKHV EKSTDDPDMF  180
IVTYEGSHHH GPQPLLIPRI AHPPPMNDLV GAGAEPSSSP AAARKRKNED MALSFSPTSE  240
YDEGGLRRDD DAEAQRRGAA ENAAPRFVGA TEHSCDDGST SVSSVARADA ATTVLSSDSP  300
PTIWSCLDWP WSQEALFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-201351901974Probable WRKY transcription factor 4
2lex_A2e-201351901974Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G31730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1016162e-81FP101616.1 Phyllostachys edulis cDNA clone: bphyem119j23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635485.11e-110WRKY transcription factor WRKY28
TrEMBLA0A0D9V7P20.0A0A0D9V7P2_9ORYZ; Uncharacterized protein
STRINGLPERR01G31730.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131442633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.13e-27WRKY DNA-binding protein 49