PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G31690.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 815aa    MW: 90224.9 Da    PI: 5.8759
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G31690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS392.16.1e-1204398082374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++lL++cA+ v+++d + a++lL++++++a  +gd  qRla++f+++L+arla+++s++yk+l+ ++ +    +++l+a++l+  ++P+ k+sh
  LPERR01G31690.1 439 ETLLIHCAQSVATDDRRSATELLKQIRQHAHANGDGDQRLAHCFANGLEARLAGTGSHIYKTLTITRLP---CTDVLKAYQLYLAACPFKKISH 529
                      789*****************************************************************9...9********************* PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                        aNq+I++ave++++vHi+D++i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g   +e++eetg+ L+++A++++vpf+f++ +a+r++
  LPERR01G31690.1 530 YFANQTIMDAVEKAKKVHIVDYGIYYGFQWPCLIQRLSNRPGGPPKLRITGIDTPQPGfrPAERIEETGRYLSDYAQTFNVPFQFQA-IASRFD 622
                      ***************************************************************************************.7***** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      ++++e+L+++++E+l+Vn++++ ++l+desv  es+r+  Lk++++++P+++++   + ++n++ F++rf eal +ysa+fd+le+++pr++e+
  LPERR01G31690.1 623 AVQMEDLHIEEDEVLIVNCMFRFKNLMDESVVAESPRNMALKTIRKMNPHLFIHGVVNGSYNAPFFVTRFREALFHYSAIFDMLETNIPRDNEQ 716
                      ********************************************************************************************** PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      r  +E +l++re+ nv++ceg er er et+++W+ r ++aGFk++pl+++++k a+  +r +++d + ++e++ +l++gWk+r L+++S W+
  LPERR01G31690.1 717 RLLIESALFSREAINVISCEGLERMERPETYKQWQVRNQRAGFKQLPLNQDIMKRAREKVRCYHKD-FVIDEDNRWLLQGWKGRILFALSTWK 808
                      ****************************************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.782412789IPR005202Transcription factor GRAS
PfamPF035142.1E-117439808IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 815 aa     Download sequence    Send to blast
MVMDAGVHDV CTLPPGSKRR DARIPIYPQI AAANGFAAEE FDPLMFLSAD AGGGFGGGGD  60
YLNVVSAPPI STNGASPPRD VSVSAAAAQA PAPQHDDSEA FSDIVLGYIN RMLMAEDIDE  120
KFEHYPVNNA DLLAAEKPFL EILADQTPLS GVSSVESPDG SSVANSCNSL SPGYCSSVSD  180
GLAAVPQTPV LEFPTAAFLQ APQLYGNLIP EGGMVESGGA WPYDPTEFCQ LQTNPVSENL  240
RSSSFASSNG SNVTFSEGFE SLLSPVGVLP DVGLNDFVVQ SQQAMHFRRG FQEGSRFLPD  300
ESKLVIDVDK LYSKDEGNSF LGEVRQEKEL VKVKTETSDV EAAVHRGKKH FYGDDLDAEE  360
GRCSKHSAPG IIDTDHLVRE MMDKVLLCNG ETCSKGVKEL REALQHDVAK HSGGGNGKGS  420
GHGKGRGKKQ PKKEVVDLET LLIHCAQSVA TDDRRSATEL LKQIRQHAHA NGDGDQRLAH  480
CFANGLEARL AGTGSHIYKT LTITRLPCTD VLKAYQLYLA ACPFKKISHY FANQTIMDAV  540
EKAKKVHIVD YGIYYGFQWP CLIQRLSNRP GGPPKLRITG IDTPQPGFRP AERIEETGRY  600
LSDYAQTFNV PFQFQAIASR FDAVQMEDLH IEEDEVLIVN CMFRFKNLMD ESVVAESPRN  660
MALKTIRKMN PHLFIHGVVN GSYNAPFFVT RFREALFHYS AIFDMLETNI PRDNEQRLLI  720
ESALFSREAI NVISCEGLER MERPETYKQW QVRNQRAGFK QLPLNQDIMK RAREKVRCYH  780
KDFVIDEDNR WLLQGWKGRI LFALSTWKPD NRSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-5244480925380Protein SCARECROW
5b3h_A4e-5244480924379Protein SCARECROW
5b3h_D4e-5244480924379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G31690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032400.0AP003240.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0406G08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619294.10.0scarecrow-like protein 9 isoform X1
SwissprotO809331e-180SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A0D9V7N70.0A0A0D9V7N7_9ORYZ; Uncharacterized protein
STRINGLPERR01G31690.20.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein