PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G31500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | C2H2 | ||||||||
Protein Properties | Length: 174aa MW: 18137.3 Da PI: 6.3882 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.4 | 0.001 | 42 | 64 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H +H LPERR01G31500.1 42 FECKTCSKRFPSFQALGGHRTSH 64 89**********99998888777 PP | |||||||
2 | zf-C2H2 | 12.1 | 0.0006 | 91 | 113 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg Fs L H+r+H LPERR01G31500.1 91 HECAVCGLEFSMGQALGGHMRRH 113 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.45E-6 | 39 | 66 | No hit | No description |
Pfam | PF13912 | 3.8E-12 | 41 | 64 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.429 | 42 | 69 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 42 | 64 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 44 | 64 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.9E-4 | 89 | 116 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.53E-6 | 89 | 117 | No hit | No description |
Pfam | PF13912 | 2.0E-11 | 90 | 115 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.803 | 91 | 118 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.89 | 91 | 113 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 93 | 113 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MESLRMHANA LLSLSSPGSS STTLPATSTA AGKRALAAEG VFECKTCSKR FPSFQALGGH 60 RTSHTRLQAR MLHDPNAAAA AAAERDRARV HECAVCGLEF SMGQALGGHM RRHRGEAGAA 120 ATVVLADADD GGPPQPVETM PDLNYPPLED PGGDGQESPT PGRSSEPELL NLLV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269|PubMed:11069694, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G31500.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269|PubMed:12368499, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833, ECO:0000269|PubMed:18201973, ECO:0000269|PubMed:18922600}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 1e-117 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. | |||
GenBank | CT831398 | 1e-117 | CT831398.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN012H15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003567258.1 | 3e-66 | zinc finger protein ZAT11 | ||||
Swissprot | Q42410 | 7e-23 | ZAT12_ARATH; Zinc finger protein ZAT12 | ||||
TrEMBL | A0A0D9V7L3 | 1e-122 | A0A0D9V7L3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G31500.1 | 1e-123 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46080.1 | 1e-22 | C2H2 family protein |