![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR01G31460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 214aa MW: 22758.1 Da PI: 8.9243 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0013 | 56 | 78 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H LPERR01G31460.1 56 FECKTCNRQFPTFQALGGHRASH 78 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0017 | 118 | 140 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cg F+ L H+r+H LPERR01G31460.1 118 HECPVCGLEFPIGQALGGHMRRH 140 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.45E-8 | 54 | 78 | No hit | No description |
Pfam | PF13912 | 1.1E-12 | 55 | 80 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.118 | 56 | 83 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 56 | 78 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 58 | 78 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.45E-8 | 113 | 140 | No hit | No description |
Pfam | PF13912 | 4.1E-11 | 117 | 142 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 118 | 140 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.806 | 118 | 145 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 120 | 140 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 214 aa Download sequence Send to blast |
MSKRSRSMWE MQEIIGSVDT ARVLMLLASQ QSHHHGMVAH PVAVRAAAAP HDARVFECKT 60 CNRQFPTFQA LGGHRASHKR PRQQQQHRHG ALVAGDDAGL CLGRHPAQPQ QPAKPRVHEC 120 PVCGLEFPIG QALGGHMRRH RAEAEATATT GNADVVKAAP AVNVKACDGG GVCLDLNLTP 180 SENCAKCRNV VGQLGGAAGQ GGVHKALAML DCFL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR01G31460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633806.1 | 3e-85 | zinc finger protein ZAT12 | ||||
TrEMBL | A0A0D9V7K7 | 1e-154 | A0A0D9V7K7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G31460.1 | 1e-155 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6282 | 21 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28710.1 | 9e-26 | C2H2 family protein |