PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G31230.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NF-YB
Protein Properties Length: 361aa    MW: 39207.2 Da    PI: 10.6611
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G31230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB173.91.6e-54210302193
            NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                      vreqdrflPian+srimkk++Pan+ki+kdaket+qecvsefisfvtseasdkcq+ekrkting+dll+a++tlGfe+yv+plk+yl+kyre 
  LPERR01G31230.1 210 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGEDLLYAMGTLGFEEYVDPLKIYLHKYREG 302
                      69*****************************************************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR009823.5E-516141IPR005680Ribosomal protein S23, eukaryotic/archaeal
PfamPF001646.8E-599140IPR006032Ribosomal protein S12/S23
SuperFamilySSF502492.23E-3320142IPR012340Nucleic acid-binding, OB-fold
Gene3DG3DSA:2.40.50.1408.0E-3520142IPR012340Nucleic acid-binding, OB-fold
CDDcd033673.88E-7426139No hitNo description
PROSITE patternPS0005505966IPR006032Ribosomal protein S12/S23
Gene3DG3DSA:1.10.20.102.6E-51209311IPR009072Histone-fold
SuperFamilySSF471132.64E-38213307IPR009072Histone-fold
PfamPF008081.7E-27216280IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.2E-21244262No hitNo description
PROSITE patternPS006850247263IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.2E-21263281No hitNo description
PRINTSPR006154.2E-21282300No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0005634Cellular Componentnucleus
GO:0022627Cellular Componentcytosolic small ribosomal subunit
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGKTRGMGAG RKLKTHRRNQ RWADKAYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ  60
PNSAIRKCAR VQLVKNGKKI AAFVPNDGCL NFIEENDEVL IAGFGRKGHA VGDIPGVRFK  120
VVKVSGVSLL ALFKEKKEKP SECPGSTGQR LTQVSSRVPT SRLVRRTARI PRLPASHRPN  180
PPLLLQRRGE AMADVGSHDE SGSPPRGGMV REQDRFLPIA NISRIMKKAV PANGKIAKDA  240
KETLQECVSE FISFVTSEAS DKCQKEKRKT INGEDLLYAM GTLGFEEYVD PLKIYLHKYR  300
EGDSKLSSKA GDGSVKKEGI GPHGGAGSSS AQGMVGAYAQ GMGYMQPQLG YVTKTGKANI  360
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v3p_SL3e-971140114040S ribosomal protein S23
4v7e_BX3e-971140114040S ribosomal protein S12
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G31230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2416530.0AK241653.1 Oryza sativa Japonica Group cDNA, clone: J065191C22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9V7H70.0A0A0D9V7H7_9ORYZ; Uncharacterized protein
STRINGLPERR01G31230.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.73e-62nuclear factor Y, subunit B1