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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G31030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 228aa MW: 24775.9 Da PI: 6.2631 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.6 | 6.3e-10 | 59 | 99 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri ++f Lr+l+P K++ +++Le+A++Y+k L LPERR01G31030.1 59 ARERRHRISDRFRVLRSLVPGG-----SKMDTVSMLEQAIHYVKFL 99 699*****************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.313 | 50 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.14E-14 | 55 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-12 | 56 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.3E-13 | 56 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.42E-14 | 56 | 103 | No hit | No description |
Pfam | PF00010 | 2.8E-7 | 59 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MDPYHYENMH DPRGFPMHPQ PYHLHPAAVL GVGEGRTMRG GGRRRPGAKL STDPQSVAAR 60 ERRHRISDRF RVLRSLVPGG SKMDTVSMLE QAIHYVKFLK AQVTLHQAAL VEHEESCHAD 120 LASAAEAAAF AAADAEAAVE FEPNHRRSAG DDDDAVMTME MPPVPVQESV VGYGSDVIAA 180 HRQLLMSGAA AHDLPPLPCC VFVQETDPSC YSVCNVHGEE ATGVRGSY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that seems to regulate organogenesis in postembryonic development. Involved in the regulation of shoot branching by controlling axillary meristem initiation. Functions in association with LAX2 to regulate the process of AM formation. Possesses transactivation activity in yeast (PubMed:21963665). {ECO:0000269|PubMed:13130077, ECO:0000269|PubMed:21963665}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G31030.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 1e-137 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618581.2 | 3e-86 | LOW QUALITY PROTEIN: transcription factor LAX PANICLE 1 | ||||
Swissprot | Q7XAQ6 | 2e-82 | LAX1_ORYSJ; Transcription factor LAX PANICLE 1 | ||||
TrEMBL | A0A0D9V7E7 | 1e-166 | A0A0D9V7E7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G31030.1 | 1e-167 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8553 | 32 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01310.1 | 2e-26 | APRATAXIN-like |