PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G30490.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 322aa    MW: 34619.3 Da    PI: 5.9255
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G30490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY62.57.6e-20123191258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS.....S....TTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae.....d....pkvveitYegeHnh 58 
                      dDg++WrKYGqK +++++fprsYYrC+++   +Cp++k+v+r +      d    p +  ++Y+ eH++
  LPERR01G30490.1 123 DDGFQWRKYGQKRINNTKFPRSYYRCSYHrerRCPAQKHVQRHSAaaaagDgddvPPLYAVVYTHEHTC 191
                      8***************************99999*********874111112111234566777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-24107192IPR003657WRKY domain
SuperFamilySSF1182901.19E-20117192IPR003657WRKY domain
SMARTSM007741.5E-30122193IPR003657WRKY domain
PfamPF031063.8E-23123192IPR003657WRKY domain
PROSITE profilePS5081117.385123166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MQAQSRLGVS GIGLGAGSGE EEHEAVVREL TRGHELTARL RAEALLALRG KGQAEATATF  60
ILGEVSRTFT VCLSIMATAG AGTSSPRRPE TPPDSAVSVG APPLRAREDN VPRKRTLTSS  120
PYDDGFQWRK YGQKRINNTK FPRSYYRCSY HRERRCPAQK HVQRHSAAAA AGDGDDVPPL  180
YAVVYTHEHT CQDSSPNTDL PETTPDYFLE SPSSLRRRGA QAGAATQQQQ QQVVNARAAM  240
EERERQALVS SLACVLQGKQ CYDDTAAAAV GAAAAATPVV VDGGEGLDVT DYDVTEPMVF  300
WGAPFGDEGN NSYGATDVDT VF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-13123192969OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G30490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ0171493e-68HQ017149.1 Oryza sativa Indica Group voucher IRGC 69429 clone 1404 chromosome 1 region F genomic sequence.
GenBankHQ0171503e-68HQ017150.1 Oryza sativa Japonica Group voucher IRGC 69844 clone 1405 chromosome 1 region F genomic sequence.
GenBankHQ0171513e-68HQ017151.1 Oryza sativa Japonica Group voucher IRGC 69849 clone 1406 chromosome 1 region F genomic sequence.
GenBankHQ0171523e-68HQ017152.1 Oryza sativa Indica Group voucher IRGC 69853 clone 1407 chromosome 1 region F genomic sequence.
GenBankHQ0171533e-68HQ017153.1 Oryza sativa Indica Group voucher IRGC 69856 clone 1408 chromosome 1 region F genomic sequence.
GenBankHQ0171543e-68HQ017154.1 Oryza sativa Indica Group voucher IRGC 69865 clone 1409 chromosome 1 region F genomic sequence.
GenBankHQ0171553e-68HQ017155.1 Oryza sativa Japonica Group voucher IRGC 69869 clone 1410 chromosome 1 region F genomic sequence.
GenBankHQ0171563e-68HQ017156.1 Oryza sativa Japonica Group voucher IRGC 69873 clone 1411 chromosome 1 region F genomic sequence.
GenBankHQ0171573e-68HQ017157.1 Oryza sativa Japonica Group voucher IRGC 69878 clone 1412 chromosome 1 region F genomic sequence.
GenBankHQ0171583e-68HQ017158.1 Oryza sativa Indica Group voucher IRGC 69884 clone 1413 chromosome 1 region F genomic sequence.
GenBankHQ0171593e-68HQ017159.1 Oryza sativa Indica Group voucher IRGC 69887 clone 1414 chromosome 1 region F genomic sequence.
GenBankHQ0171603e-68HQ017160.1 Oryza sativa Indica Group voucher IRGC 69889 clone 1415 chromosome 1 region F genomic sequence.
GenBankHQ0171613e-68HQ017161.1 Oryza sativa Japonica Group voucher IRGC 69895 clone 1416 chromosome 1 region F genomic sequence.
GenBankHQ0171623e-68HQ017162.1 Oryza sativa Japonica Group voucher IRGC 69900 clone 1417 chromosome 1 region F genomic sequence.
GenBankHQ0171633e-68HQ017163.1 Oryza sativa Indica Group voucher IRGC 69902 clone 1418 chromosome 1 region F genomic sequence.
GenBankHQ0171643e-68HQ017164.1 Oryza sativa Indica Group voucher IRGC 69904 clone 1419 chromosome 1 region F genomic sequence.
GenBankHQ0171653e-68HQ017165.1 Oryza sativa Indica Group voucher IRGC 69906 clone 1420 chromosome 1 region F genomic sequence.
GenBankHQ0171663e-68HQ017166.1 Oryza sativa Indica Group voucher IRGC 69907 clone 1421 chromosome 1 region F genomic sequence.
GenBankHQ0171673e-68HQ017167.1 Oryza sativa Indica Group voucher IRGC 69913 clone 1422 chromosome 1 region F genomic sequence.
GenBankHQ0171683e-68HQ017168.1 Oryza sativa Indica Group voucher IRGC 69915 clone 1423 chromosome 1 region F genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877887.11e-109probable WRKY transcription factor 4
TrEMBLA0A0D9V7790.0A0A0D9V779_9ORYZ; Uncharacterized protein
STRINGLPERR01G30490.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125382837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.17e-18WRKY DNA-binding protein 62