PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G30480.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 609aa    MW: 67706.4 Da    PI: 7.6139
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G30480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.12.7e-2171131359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                      Dg+ WrKYGqK++k+s fpr YYrC+++   +C + k v++++ +dp + ++tY+ eH+++
  LPERR01G30480.1  71 DGHLWRKYGQKNIKDSAFPRLYYRCSYRedrQCLASKLVQQENdDDPPLYKVTYTYEHTCN 131
                      9**************************99999*******987516899***********97 PP
2WRKY68.11.3e-21403464259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                      +Dgy+W+KYGqK+++++++ r YY+Ct++   +C +kk+v++++  +p ++ +tY +eH+++
  LPERR01G30480.1 403 KDGYQWKKYGQKNIQDNDYLRLYYKCTFSrerRCAAKKQVQQQDaGEPPMFLVTYLNEHTCH 464
                      7**************************998899*******987526999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-2159131IPR003657WRKY domain
SuperFamilySSF1182906.54E-2162132IPR003657WRKY domain
SMARTSM007744.8E-3369132IPR003657WRKY domain
PfamPF031063.0E-2371130IPR003657WRKY domain
PROSITE profilePS5081115.81271133IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.8E-23389464IPR003657WRKY domain
SuperFamilySSF1182901.24E-20398465IPR003657WRKY domain
SMARTSM007746.3E-31402465IPR003657WRKY domain
PfamPF031063.1E-22403464IPR003657WRKY domain
PROSITE profilePS5081115.526404466IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MASPRLKREQ SFDFEEASAQ EAMGSAAVSA PYSPPGGVFG ISPPESSPRD GRKRRKDRPS  60
WVKHTFTPHF DGHLWRKYGQ KNIKDSAFPR LYYRCSYRED RQCLASKLVQ QENDDDPPLY  120
KVTYTYEHTC NTTPVPTPDV VAEQPAPVAA GDTYLLRFGS SSNDGGVALQ NERERHQHTA  180
ASRKPFMMLS FDSSSHHQLH EQKQNGFSPD QLPPVAASPS PSFTAEALPP PATTMAMNDG  240
GDLFSTWDSF RYGLDDDHGH IGNHGRRRIH LGCVTSLSSK MAFGQDTIEQ LYRELTGGRH  300
LSAKLQALLE GPLDSRSQKE AEMVSRELGR VFMVSLYMLK PCSSSSSRPE EVTRTSPETT  360
RTDDSICPHT PARVKRIRTE EVSVRNGRDE VVTRREITPS PYKDGYQWKK YGQKNIQDND  420
YLRLYYKCTF SRERRCAAKK QVQQQDAGEP PMFLVTYLNE HTCHLHHQTT TTTAAGSSPT  480
TTAPPSRRNS SSPEALDSAA NGSGVRLLLP HAAAAAAEED AAIVKCLANV IRGGAGASDP  540
PVSATTTTQM DYFFLYDPST FSPPVVAAAD EADRRVLLMG DCVDATRVAR NMETDTAWPR  600
YTRDTSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-14711301068OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15156RKRRKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G30480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126096e-92CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644112.11e-115probable WRKY transcription factor 2
TrEMBLA0A0D9V7780.0A0A0D9V778_9ORYZ; Uncharacterized protein
STRINGLPERR01G30480.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115292433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.14e-18WRKY DNA-binding protein 62