PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G30470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | WRKY | ||||||||
Protein Properties | Length: 184aa MW: 20360 Da PI: 5.7241 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 39.2 | 1.4e-12 | 2 | 49 | 15 | 58 |
-TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS CS WRKY 15 vkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnh 58 ++g+ fpr YYrCt++ gCp+ k+ve+ +edp ++ ++ ++eH++ LPERR01G30470.1 2 IRGKAFPRCYYRCTYHqdhGCPASKHVEQHnSEDPPLFRVIHTNEHTC 49 89*************98999*******9852689************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 11.864 | 1 | 52 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.8E-13 | 1 | 51 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.5E-11 | 1 | 50 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.23E-11 | 2 | 51 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.9E-13 | 2 | 49 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MIRGKAFPRC YYRCTYHQDH GCPASKHVEQ HNSEDPPLFR VIHTNEHTCG TSTFASDFMA 60 SSVQIQQIAD ASLRKQAEVE RPPMMQVQYR CSGGYSMAMK EEKDAIVSSL LTVITGCHIA 120 ESDDNAVALP VAGCNHQSGS SAVSPALLPA LDDLKLDFML ESVLEPHWVE PLDLAWFKEP 180 THTG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G30470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003302 | 9e-70 | AP003302.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0703B11. | |||
GenBank | AP014957 | 9e-70 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 9e-70 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642042.1 | 9e-98 | probable WRKY transcription factor 64 | ||||
TrEMBL | A0A0D9V775 | 1e-137 | A0A0D9V775_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G30470.1 | 1e-137 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11814 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 7e-12 | WRKY DNA-binding protein 55 |