PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G30020.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family AP2
Protein Properties Length: 393aa    MW: 42924.2 Da    PI: 8.9617
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G30020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.16.6e-1163119155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s ykGV++++ +g+++A+++d   +n  ++k+ + g ++t+e Aa+ ++ a++k++g
  LPERR01G30020.1  63 SVYKGVTRHRGTGKFEAHLWDkHGWNPdQTKKGRQGAYDTEEAAARTYDLAALKIWG 119
                      78*******************88776687877788*******************987 PP
2AP2414.7e-13184228855
              AP2   8 wdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +++ +grW+A+I       g +k+ +lg+f+t eeAa+a++ a+ +++g
  LPERR01G30020.1 184 RHHHNGRWEARIGKsE---G-KKYLYLGTFDTQEEAARAYDLAAIQFRG 228
                      57789******88833...2.6***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512577129No hitNo description
SuperFamilySSF541711.05E-1263128IPR016177DNA-binding domain
PfamPF008475.4E-863119IPR001471AP2/ERF domain
CDDcd000185.50E-1463127No hitNo description
PROSITE profilePS5103217.30664127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-1264127IPR001471AP2/ERF domain
SMARTSM003801.5E-1564133IPR001471AP2/ERF domain
CDDcd000186.81E-24162237No hitNo description
PROSITE profilePS5103218.558163236IPR001471AP2/ERF domain
SMARTSM003804.6E-26179242IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-18184236IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-16184237IPR016177DNA-binding domain
PfamPF008471.2E-9184228IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MVSMRKKKGL TAATTPHSPS WSSSTASSCI VSTCKEGGKK RSKHKKRPKN GAGDAAVPRG  60
SSSVYKGVTR HRGTGKFEAH LWDKHGWNPD QTKKGRQGAY DTEEAAARTY DLAALKIWGS  120
GHALNFPLDT YRQERERMQR MTREEYLATL RRRSSGFSRG ISKYRGVANS TFDCNIMPIF  180
VTARHHHNGR WEARIGKSEG KKYLYLGTFD TQEEAARAYD LAAIQFRGRS AVTNFDARCY  240
TYPDHPLPPP PPPPPAACKA EPEPEPTVLE ATTTPGPEPL LRPKPEPVEW EMPPVCPALR  300
DVDDVDHAIA EILPALCMDQ ADFEARYPAR RARADGSGWS SSDDVAAADV RGLPDDVGFV  360
DDIEALFVDA PGLPAAAVAA PAASRRASAV AAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13945KRSKHKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G30020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851212e-75AY685121.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D10 (AP2D10) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646190.21e-144AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D9V7090.0A0A0D9V709_9ORYZ; Uncharacterized protein
STRINGLPERR01G30020.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134012730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.37e-52AP2 family protein