PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G29010.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 676aa    MW: 73935.9 Da    PI: 8.0558
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G29010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.27.8e-152984156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     r++ +++tk+q e+Le +F  + +p+ +++++L+ ++gL  +qVk+WFqN+R++ k
  LPERR01G29010.1 29 RKRLQRLTKQQSEILEGFFSVCGHPDDSQKRHLSGRTGLGLDQVKFWFQNKRTQVK 84
                     4555799*********************************************9877 PP
2START75.11.7e-2420239920205
                      T-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S...EEEEEEEECTT.......EEEEEE CS
            START  20 gWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla...kaetlevissg.......galqlm 94 
                      +W+ ++    +++n + + q  + +++     +++ea r  ++v m++   v  l++    +   ++   + +++++i +        g++qlm
  LPERR01G29010.1 202 LWFPVPgcsyDILNMMAYQQAYAGDNGanamgFKTEATRGDAMVMMDSKSIVDFLMEPY-NYRSFFPgaiSGAITNRIYTWptndgynGVVQLM 294
                      56666666666677777777766655567777788888888888888886666666666.6666666555666666665545557899****** PP

                      EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS
            START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187
                      + e++++splvp R  +f+R++    +g  v+vd S+d  +       ++++++lpSg+li+++  + +kv+ vehv ++++ +h+l+++ + s
  LPERR01G29010.1 295 TVEMMFPSPLVPvRRCTFLRHCNVVAEGAVVVVDLSLDDGTG------FAKCRKLPSGFLIRSLRPNTCKVIAVEHVRVDDSGIHELYQPCL-S 381
                      **********************************99987665......789***************************************98.6 PP

                      HHHHHHHHHHHHTXXXXX CS
            START 188 glaegaktwvatlqrqce 205
                      gl++g ++wv t+ rq +
  LPERR01G29010.1 382 GLMFGSRRWVVTMARQAA 399
                      99***********99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-162084IPR009057Homeodomain-like
SuperFamilySSF466891.54E-152185IPR009057Homeodomain-like
PROSITE profilePS5007114.4952686IPR001356Homeobox domain
SMARTSM003892.2E-122790IPR001356Homeobox domain
CDDcd000867.63E-142886No hitNo description
PfamPF000462.0E-122984IPR001356Homeobox domain
PROSITE patternPS0002706184IPR017970Homeobox, conserved site
PROSITE profilePS5084815.243174403IPR002913START domain
CDDcd088754.06E-72180397No hitNo description
SMARTSM002340.0044187400IPR002913START domain
SuperFamilySSF559617.97E-16233398No hitNo description
PfamPF018528.0E-19288399IPR002913START domain
SuperFamilySSF559613.11E-8418629No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MDVQTQELLA TFEADCGLSP ENSNTNQKRK RLQRLTKQQS EILEGFFSVC GHPDDSQKRH  60
LSGRTGLGLD QVKFWFQNKR TQVKTSCCKE DNYKLTVENE ILRDENRYFK IAICYAVCVN  120
CGNKSQQNHL SVVMGRLKGH TDWLQQEITR SHGTLLNANI PSQLDPSAQT VLPGQQDAEM  180
MAELAKNAMH ALIIVSQTHV GLWFPVPGCS YDILNMMAYQ QAYAGDNGAN AMGFKTEATR  240
GDAMVMMDSK SIVDFLMEPY NYRSFFPGAI SGAITNRIYT WPTNDGYNGV VQLMTVEMMF  300
PSPLVPVRRC TFLRHCNVVA EGAVVVVDLS LDDGTGFAKC RKLPSGFLIR SLRPNTCKVI  360
AVEHVRVDDS GIHELYQPCL SGLMFGSRRW VVTMARQAAR LRDVHLTKST LKVSTKGRKN  420
LMKLADDLLV SFAGSVAPVG AAGGMWTVLT GAGMEDDIRV AYRCITEGTS TNTTNAVLSA  480
CASLRVPLPM SQVFELLRNL TLRSKWDVLV HGSTVKEEVT IAKGAGSDDA VTILHAKRGK  540
GQNKERIMIL QNNAYDASGS FMVYSPVDSQ LMNTMILAPS DQPSGASNLS LYPTGFSLLP  600
DGEAAKDTTG MDIGEVGGTL MTVGFQIPVK LAGGAGTVVN PRSVASAVRL MDDMITIVKK  660
TLTEDHSAIR GIGPFN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G29010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646400.10.0PREDICTED: homeobox-leucine zipper protein TF1
SwissprotQ5ZAY00.0TF1_ORYSJ; Homeobox-leucine zipper protein TF1
TrEMBLA0A0D9V6M40.0A0A0D9V6M4_9ORYZ; Uncharacterized protein
STRINGLPERR01G29010.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104752833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.11e-104protodermal factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]