PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G28870.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 480aa    MW: 50406.2 Da    PI: 9.672
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G28870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00019238260223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +C+ Cg+ F  ++ L+ H  + H
  LPERR01G28870.1 238 SCHRCGEQFGKWEALEAHHLSkH 260
                      7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280239260IPR007087Zinc finger, C2H2
SuperFamilySSF563992.59E-22262473No hitNo description
Gene3DG3DSA:3.90.228.108.4E-12286450IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MGERRRRASA VAGRGEEEKA SAPAVAPAPN VWFALKRSLH CRSEPSEVHV PRPKAVAATG  60
GHLSAIVTKR AAPRSGCSRS IANLRDVIHG SKRHPERPPS CSPRSIGSSE FLNPIAHEVV  120
LSTNSRCELK ITGFGTAGCG GGLVAAAAAA QHEADGDGGV VSSFVGTLRP GTPGPGWSHG  180
ALQYSGSCRG SMRCTPPRSP NLLLDKDGAA ATGAVTAHRA SCEDAVKSGG GKGSGGLSCH  240
RCGEQFGKWE ALEAHHLSKH AVTELVEGDS SRKIVEIICR TSLLKSESSC VRIERVFKVH  300
NTQRTLARFE EYREAVKLKA SKLPKKHPRC LADGNELLRF HGATLSCALG GGGSSSLCAS  360
DKCAVCRIIR HGFSAKKEGK AGVGVFTTST SGRAFESIEA STGGGGNDDA AATRKALLVC  420
RVIAGRVHKP LENLKEFAGQ TGFDSLAGKV GPYSNIEELY LLNPRALLPC FVYNNAGRDH
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G28870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0710140.0AK071014.1 Oryza sativa Japonica Group cDNA clone:J023079O17, full insert sequence.
GenBankAK1043110.0AK104311.1 Oryza sativa Japonica Group cDNA clone:001-017-D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635096.10.0uncharacterized protein LOC4327046
TrEMBLA0A0D9V6K80.0A0A0D9V6K8_9ORYZ; Uncharacterized protein
STRINGLPERR01G28870.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32772841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-134C2H2 family protein