PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G28210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 285aa MW: 31167.3 Da PI: 6.7165 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34 | 5.2e-11 | 108 | 156 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +rEr RR+r+ ++++ L+ +lP++ s+K K i+ A YI++L+ LPERR01G28210.1 108 RHIMRERLRRERLSQGYSDLQAILPTS---ASTKGGKNIIVSAAASYIRELE 156 599***********************9...9******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.54E-15 | 103 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.109 | 104 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-10 | 106 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.9E-8 | 108 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-7 | 110 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MNDDDANHPF DFVHDDELLV SLGFLLPPPL PPDHRGSAFS AYQCAASSSE STLSQRYRSA 60 PANVHRRMHG YLRSIDVDVA TVEMQPAAGE HAFEQQAAPS GGGSARFRHI MRERLRRERL 120 SQGYSDLQAI LPTSASTKGG KNIIVSAAAS YIRELEGRKG WLRERNEELK RAPAPPMKPA 180 GAGMVVKVRA ESEFGSMVDV FEVVLRRLKA MEELQVTAIQ SCFCAGGMWM DVAVESKISS 240 HEVDKAVTNA LVGLQEIESS CLQGQKISSR SSFSCQVESG VLLMS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 118 | RLRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G28210.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635057.1 | 1e-109 | transcription factor BHLH148-like | ||||
TrEMBL | A0A0D9V6C6 | 0.0 | A0A0D9V6C6_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G28210.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12730 | 24 | 32 |