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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR01G27380.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
TCP |
Protein Properties |
Length: 301aa MW: 31948.5 Da PI: 7.4425 |
Description |
TCP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR01G27380.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | TCP | 96.6 | 4.6e-30 | 52 | 134 | 3 | 88 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88
g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a ++i++l+ ++++++ ++ ++ +++++++
LPERR01G27380.1 52 GGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQFPPQGAA---DHLCMSHHHHHM 134
78*************************************************************99999333...333333322222 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 301 aa
Download sequence Send
to blast |
MILGSSTNQQ SAAEEEAELA RKQTAAAAAA ATSRQWSAQT ESRIVRVSRV FGGKDRHSKV 60 KTVKGLRDRR VRLSVPTAIQ LYDLQDRLGL NQPSKVVDWL LNAARHEIDK LPPLQFPPQG 120 AADHLCMSHH HHHMAPSPAA MMMHHVDDKY HVAAMAAAAD KAGGGGAGDD VDGGHMVGRF 180 PAGGYHRFMG LNNPLGMVNT AAMPFHYAGG ESWNNNNNNN NGSVQDGIGA GSPQVAAAAA 240 AAAAHHSSAF PSLLSLAPGS HHHQLVFYSS EAEQFTVDNL GSQSLSLSSA RAFHDHDQTG 300 S
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK071964 | 1e-123 | AK071964.1 Oryza sativa Japonica Group cDNA clone:J013079O19, full insert sequence. |
GenBank | AP003274 | 1e-123 | AP003274.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0512C01. |
GenBank | AP014957 | 1e-123 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
GenBank | CP012609 | 1e-123 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
GenBank | CT832213 | 1e-123 | CT832213.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN047P02, full insert sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G60970.1 | 1e-40 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |