PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G27250.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 877aa    MW: 95106.2 Da    PI: 6.2584
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G27250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.57.2e-21228283156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      r+k +++t+eq++++e+lF+++++p++ +r++L+++lgL+ rqVk+WFqNrR++ k
  LPERR01G27250.1 228 RKKYHRHTAEQIRTMEALFKESPHPDEMQRQQLSNQLGLSARQVKFWFQNRRTQIK 283
                      7999************************************************9877 PP
2START174.85.3e-554086351206
                      HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
            START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                      ela +a++e v++ +++ep+Wv+ +    +++n+de+++ f  +++         s+ea+r++gvv  ++++lv+ ++d++ qW+e ++    k
  LPERR01G27250.1 408 ELAGRALDEMVAMCSSGEPLWVRGVetgrDILNYDEYVRLFRFEDGgsgdrmdgWSVEASRECGVVYLDATQLVRAFMDVN-QWKELFPsmisK 500
                      57899*********************************9876555567*****99**************************.*******9999* PP

                      EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS
            START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165
                      a+tl+vi++g      g++qlm+aelq+l+p+vp R+f+f+Ry+++l a++w+ivdvS +  +      s v + + pSg++ie+  ngh+k+t
  LPERR01G27250.1 501 AATLDVINKGeddgrdGIVQLMYAELQMLTPMVPtREFYFARYCKKLAAERWAIVDVSFNKSETDIDATSPVMCWKNPSGCVIEEQTNGHCKLT 594
                      **********************************************************9988887666666667999***************** PP

                      EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      wveh+ ++  +++ ++r +  sg+a+ga+ wva+lq +ce+
  LPERR01G27250.1 595 WVEHTRCRRCTVPPVYRAVTASGVAFGARPWVAALQLHCER 635
                      ***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.59E-20210286IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-22216279IPR009057Homeodomain-like
PROSITE profilePS5007117.848225285IPR001356Homeobox domain
SMARTSM003892.0E-18227289IPR001356Homeobox domain
CDDcd000863.98E-18228283No hitNo description
PfamPF000462.4E-18228283IPR001356Homeobox domain
PROSITE patternPS000270260283IPR017970Homeobox, conserved site
PROSITE profilePS5084837.615399638IPR002913START domain
SuperFamilySSF559614.67E-29400635No hitNo description
CDDcd088751.63E-103403634No hitNo description
PfamPF018528.3E-45408635IPR002913START domain
SMARTSM002341.1E-45408635IPR002913START domain
Gene3DG3DSA:3.30.530.201.4E-4464599IPR023393START-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 877 aa     Download sequence    Send to blast
MEIEAVEAGR RHHGEEASGA APFGRSSSLL ATAGCAEGFD GALMELKDLR SQLHQAADCC  60
EKAFLDTEKK KLILESTKGY ICDAIVAVID HLGNVSSKLE HQLQEKIEIT QTEKKLNFLK  120
QLREEPKRKM VLTPGRERSV ATANFESPTD ATNSFSFRAE AGAFGRNEPA AAGGYDVEGG  180
NEVQPASEAV EISSENAGPG CSQSQSGGGS GEDGDHNDGE GGDKQKRRKK YHRHTAEQIR  240
TMEALFKESP HPDEMQRQQL SNQLGLSARQ VKFWFQNRRT QIKAIQERHE NSLLKSELEK  300
LQEEHRAMRE LVKKPSRCPN CGIAASTAAT SSDAAAAATR EQRLRLENAE LKAEIGKIRG  360
TPGKAVASSA SPPCSAGAVE TNSRRSPLLH GHDGGFLCRQ EDKPRILELA GRALDEMVAM  420
CSSGEPLWVR GVETGRDILN YDEYVRLFRF EDGGSGDRMD GWSVEASREC GVVYLDATQL  480
VRAFMDVNQW KELFPSMISK AATLDVINKG EDDGRDGIVQ LMYAELQMLT PMVPTREFYF  540
ARYCKKLAAE RWAIVDVSFN KSETDIDATS PVMCWKNPSG CVIEEQTNGH CKLTWVEHTR  600
CRRCTVPPVY RAVTASGVAF GARPWVAALQ LHCERMVFAV ATNVPTRDSN GVSTLAGRRS  660
VLRLAHRMTS SLCRSIGGSP DLAWRRGPKR GGGGDGIWLA SRVNAGDDPG EPQGLIAYAA  720
LSTWLPVNPT ALLDLLRDES RRPEAARPDE EGEESGAKWI LQDICTNPCE STIAYAAIDA  780
AALQPVIAGH DSSGVPFLPC GFISVMPDGL ESKPVVITAS GRGGVAAGAG SLVTVAFQVM  840
ASSSTAAVLS PDSVEAVTGM VSSTLRNVRK ALRCDDL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222227DKQKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G27250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032561e-115AP003256.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0460E08.
GenBankAP0032741e-115AP003274.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0512C01.
GenBankAP0149571e-115AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-115CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644459.10.0homeobox-leucine zipper protein ROC9
SwissprotQ5JMF30.0ROC9_ORYSJ; Homeobox-leucine zipper protein ROC9
TrEMBLA0A0D9V5Y20.0A0A0D9V5Y2_9ORYZ; Uncharacterized protein
STRINGLPERR01G27250.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein