PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G26480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | HSF | ||||||||
Protein Properties | Length: 440aa MW: 49174.1 Da PI: 4.9505 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 107.6 | 9.4e-34 | 13 | 103 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+ye+++d++++ ++ w+ g+sfvv ++ ef +++LpkyFkh+nf+SFvRQLn+YgF+kv+ e+ weF+++ F +g++ l+ LPERR01G26480.1 13 FLSKTYEMVDDPATDAVVGWTPAGTSFVVANQPEFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQ---------WEFANEDFIRGQQYRLK 97 9***************************************************************9998.........***************** PP XXXXXX CS HSF_DNA-bind 96 kikrkk 101 +i+r+k LPERR01G26480.1 98 NIHRRK 103 ****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 2.3E-59 | 9 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.26E-33 | 9 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 9.6E-37 | 10 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.4E-30 | 13 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-20 | 13 | 36 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-20 | 51 | 63 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 52 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-20 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009958 | Biological Process | positive gravitropism | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0048530 | Biological Process | fruit morphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MEGGGGGGSL PPFLSKTYEM VDDPATDAVV GWTPAGTSFV VANQPEFCRD LLPKYFKHNN 60 FSSFVRQLNT YGFRKVDPEQ WEFANEDFIR GQQYRLKNIH RRKPIFSHSS HTQGVGPLTD 120 NERRDYEEEI ERLKCDNAAL SSELQSNTLK KLTMDKRMQA LEEKLFVVED QQRSLISYVR 180 EIVKSPGFLS SFVQQHDHHR KKRRLLVPIS FHEDENPQEN QIMPCDLANS PAQALYRESF 240 DKMESSLNSL ENLLREASEE FGNDISYDDG APGPSSTVVL TELHSPGESD PRVPSPSTRM 300 CTSSAGAGDS HSSRDVAEGS TSCAGSPVPQ IHSRVDTRAK VSEIDVNSEP AVTETGPSRD 360 QPAEEPPVVA PGANDGFWQQ FLTEQPGSSD THQEAQSERR DGGNKVDEIK SGDRQNFWWG 420 KKNVEQITEK LGHLTSTEKT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-27 | 3 | 102 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-27 | 3 | 102 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-27 | 3 | 102 | 19 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G26480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109856 | 0.0 | AK109856.1 Oryza sativa Japonica Group cDNA clone:002-148-G05, full insert sequence. | |||
GenBank | AY344491 | 0.0 | AY344491.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF9 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615651.1 | 0.0 | heat stress transcription factor A-4b | ||||
Swissprot | Q94J16 | 0.0 | HFA4B_ORYSJ; Heat stress transcription factor A-4b | ||||
TrEMBL | A0A0D9V5M7 | 0.0 | A0A0D9V5M7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G26480.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3296 | 37 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18880.1 | 1e-76 | heat shock transcription factor A4A |
Publications ? help Back to Top | |||
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