PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G25700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | WRKY | ||||||||
Protein Properties | Length: 239aa MW: 26185.4 Da PI: 7.2895 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.6 | 1.1e-32 | 160 | 218 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+ LPERR01G25700.1 160 LDDGYRWRKYGQKAVKNSKHPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP 218 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-33 | 146 | 218 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.09E-28 | 153 | 219 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.885 | 155 | 220 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-38 | 160 | 219 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.9E-26 | 161 | 218 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006412 | Biological Process | translation | ||||
GO:0005840 | Cellular Component | ribosome | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003735 | Molecular Function | structural constituent of ribosome | ||||
GO:0019843 | Molecular Function | rRNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MEINLQGDDH DEAQAAPTLP HFPYFAVPVD STMSDGQHGP TLDALGPPPP CNHPGGLDGT 60 PQLTTTTSAA VPMMLPAMTP LDWQSLLQTC LQVQPPVLEQ QQAAADQCSG ENDHGDQAGE 120 SSGAVNKEKQ LAKGGAGRSG KKKATRPRFA FQTKSDNDIL DDGYRWRKYG QKAVKNSKHP 180 RSYYRCTHHT CNVKKQVQRL AKDTSIVVTT YEGVHNHPCE KLMEALTPIL KQLQFLSQF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-24 | 150 | 217 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 3e-24 | 150 | 217 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00539 | DAP | Transfer from AT5G41570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G25700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108909 | 1e-175 | AK108909.1 Oryza sativa Japonica Group cDNA clone:002-152-G06, full insert sequence. | |||
GenBank | AY341845 | 1e-175 | AY341845.1 Oryza sativa (japonica cultivar-group) WRKY4 mRNA, complete cds. | |||
GenBank | AY870607 | 1e-175 | AY870607.1 Oryza sativa (japonica cultivar-group) WRKY23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006646294.1 | 1e-122 | PREDICTED: probable WRKY transcription factor 56 | ||||
TrEMBL | A0A0D9V5B5 | 1e-179 | A0A0D9V5B5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G25700.2 | 1e-180 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1100 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46130.1 | 9e-56 | WRKY DNA-binding protein 43 |