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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G25240.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | B3 | ||||||||
Protein Properties | Length: 637aa MW: 73302.3 Da PI: 5.7894 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.3 | 3.6e-15 | 18 | 104 | 13 | 95 |
TT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 13 sgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++rl +p +f+ ++ + ++s + tl++ +g++W v+l +k +gr++lt+GW +Fv++n L+ +f++F++d+++ f +v LPERR01G25240.2 18 TRRLEIPHDFLVHIpevatntsdtS--LPSSAKGTLQNFEGKTWPVEL--EKLDGRVYLTTGWTKFVEDNFLRKFEFLLFRYDENMHF--MVL 104 4579999999988888877776432..3388899**************..********************************998888..665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-19 | 5 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.294 | 6 | 109 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.82E-19 | 6 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.21E-15 | 7 | 107 | No hit | No description |
SMART | SM01019 | 2.7E-11 | 9 | 109 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-12 | 18 | 103 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 637 aa Download sequence Send to blast |
MEGARRHHFM KVMVGEFTRR LEIPHDFLVH IPEVATNTSD TSLPSSAKGT LQNFEGKTWP 60 VELEKLDGRV YLTTGWTKFV EDNFLRKFEF LLFRYDENMH FMVLPFSLNA CEKVIRSSGS 120 PEGKLPYDIF CSNERVQNGR LTEAVNSLTP SHSQIVTLQR SAQGHEHISA QSCPDQHETC 180 LLKNGLDEHL SLKGYMEDDK ANAIAEVMRT LDVDKVTVEL FCAMLGFYKW NVDAVAEVFD 240 ICKGKPHIQN QFLKHKLLFQ FDTVKRKLRN FFLPDDYYSS PIPKSRKSGL EDPKLSNQSL 300 QRDLTAVSCR LVDECSFQDS EQVKTAHDEV DLEPRNSQGE NEGNLDKVNN KEIGEEQTEI 360 NAVETFESLM RSIESSPTNC EVSAYSRLNG LCLTWKPTEH VDPLEKVLLD IQRDNFVKTI 420 SHVQGIMRNH PSDLLTADVI TTVVQKEILK WDHCLEDRDA QRIVNALLEH AKKIKEMHNF 480 NLELRKEEFS AKLQVQLKWQ LKEVETAYTS LELDYKKATS DDNAAFSSLH EQKKKLHNLQ 540 NEITGLQQSL EMKKDEMQKL SHQIAEHESV FQKSLMERIR IKEVMKSYEQ TLAEVKVRLT 600 STEVGSIDVE ALVKVEMDNM TKEIELSKES LLNITFK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G25240.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK243092 | 0.0 | AK243092.1 Oryza sativa Japonica Group cDNA, clone: J100023B20, full insert sequence. | |||
GenBank | AP003229 | 0.0 | AP003229.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0022F10. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614209.1 | 0.0 | B3 domain-containing protein Os03g0120900 | ||||
Swissprot | Q5JNA1 | 0.0 | Y1237_ORYSJ; B3 domain-containing protein Os03g0120900 | ||||
TrEMBL | A0A0D9V555 | 0.0 | A0A0D9V555_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G25240.2 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16640.1 | 1e-11 | B3 family protein |