PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G25240.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 637aa    MW: 73302.3 Da    PI: 5.7894
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G25240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.33.6e-15181041395
                      TT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3  13 sgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      ++rl +p +f+ ++          +   ++s + tl++ +g++W v+l  +k +gr++lt+GW +Fv++n L+  +f++F++d+++ f  +v 
  LPERR01G25240.1  18 TRRLEIPHDFLVHIpevatntsdtS--LPSSAKGTLQNFEGKTWPVEL--EKLDGRVYLTTGWTKFVEDNFLRKFEFLLFRYDENMHF--MVL 104
                      4579999999988888877776432..3388899**************..********************************998888..665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-195110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.2946109IPR003340B3 DNA binding domain
SuperFamilySSF1019361.82E-196114IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-157107No hitNo description
SMARTSM010192.7E-119109IPR003340B3 DNA binding domain
PfamPF023622.5E-1218103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MEGARRHHFM KVMVGEFTRR LEIPHDFLVH IPEVATNTSD TSLPSSAKGT LQNFEGKTWP  60
VELEKLDGRV YLTTGWTKFV EDNFLRKFEF LLFRYDENMH FMVLPFSLNA CEKVIRSSGS  120
PEGKLPYDIF CSNERVQNGR LTEAVNSLTP SHSQIVTLQR SAQGHEHISA QSCPDQHETC  180
LLKNGLDEHL SLKGYMEDDK ANAIAEVMRT LDVDKVTVEL FCAMLGFYKW NVDAVAEVFD  240
ICKGKPHIQN QFLKHKLLFQ FDTVKRKLRN FFLPDDYYSS PIPKSRKSGL EDPKLSNQSL  300
QRDLTAVSCR LVDECSFQDS EQVKTAHDEV DLEPRNSQGE NEGNLDKVNN KEIGEEQTEI  360
NAVETFESLM RSIESSPTNC EVSAYSRLNG LCLTWKPTEH VDPLEKVLLD IQRDNFVKTI  420
SHVQGIMRNH PSDLLTADVI TTVVQKEILK WDHCLEDRDA QRIVNALLEH AKKIKEMHNF  480
NLELRKEEFS AKLQVQLKWQ LKEVETAYTS LELDYKKATS DDNAAFSSLH EQKKKLHNLQ  540
NEITGLQQSL EMKKDEMQKL SHQIAEHESV FQKSLMERIR IKEVMKSYEQ TLAEVKVRLT  600
STEVGSIDVE ALVKVEMDNM TKEIELSKES LLNITFK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G25240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2430920.0AK243092.1 Oryza sativa Japonica Group cDNA, clone: J100023B20, full insert sequence.
GenBankAP0032290.0AP003229.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0022F10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614209.10.0B3 domain-containing protein Os03g0120900
SwissprotQ5JNA10.0Y1237_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A0D9V5550.0A0A0D9V555_9ORYZ; Uncharacterized protein
STRINGLPERR01G25240.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132352630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.11e-11B3 family protein