PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G25220.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 405aa    MW: 45095.4 Da    PI: 10.2837
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G25220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.76.9e-2119118199
                      EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      ffkvl     + ++rl +p +f++++        ++ ke+s+  tle +sgr+W v +  r++ +++++t+GW +Fv+++ L++ +fvvF++dg
  LPERR01G25220.1  19 FFKVL--VGDF-KQRLKIPPNFCKHIpweesrkaKSLKESSMAATLEGPSGRTWLVVI--RRTAEGTFFTSGWPKFVQDQALRDLEFVVFRYDG 107
                      56666..3444.457********888***99999666789******************..********************************** PP

                      SSEE..EEEEE-S CS
               B3  87 rsefelvvkvfrk 99 
                      ++ f  + +vf++
  LPERR01G25220.1 108 NTHF--TAMVFDR 118
                      9999..6666665 PP
2B353.44.7e-17301387598
                      -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +++ +v  s ++++p  f ++h   ++e ++++l+d++g+ W v +i  ++++r  l++GW  F++ n L+egD +vF+l+   ef  +v++fr
  LPERR01G25220.1 301 MSTMHVYYSFMMRFPTGFSRQHL--PRERTDVVLRDPTGKAWAVLYI-PNTRDR--LSRGWCAFARGNCLEEGDYCVFELVAAGEF--RVHIFR 387
                      6788999999*********9995..345679***************4.444455..9**********************9986666..999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-2114121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-2115123IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.84416119IPR003340B3 DNA binding domain
CDDcd100172.78E-1817117No hitNo description
SMARTSM010191.3E-1219119IPR003340B3 DNA binding domain
PfamPF023622.3E-1819117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.6E-22289387IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-23291387IPR015300DNA-binding pseudobarrel domain
CDDcd100174.23E-24295387No hitNo description
PROSITE profilePS5086314.113297389IPR003340B3 DNA binding domain
SMARTSM010197.1E-11297389IPR003340B3 DNA binding domain
PfamPF023627.6E-16299387IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MPGAGGKSPW ASGERRPHFF KVLVGDFKQR LKIPPNFCKH IPWEESRKAK SLKESSMAAT  60
LEGPSGRTWL VVIRRTAEGT FFTSGWPKFV QDQALRDLEF VVFRYDGNTH FTAMVFDRTA  120
CEREDLVGSG GGDRPRKKRG RPRNASRDAP RPKKDSVGKE LVAYNHAPPT GQPLQIADSN  180
GTPEQGSTAV KNEEGDDDDE IVLCALPAPS PSPSSTQHAS PNPSHVPEGA LGVDGVAAAK  240
RGALKTRSLQ DDLALASIPL SIRRYKGYVS RRRPVTTAER QRATEIAHAF RSPLPYCVIR  300
MSTMHVYYSF MMRFPTGFSR QHLPRERTDV VLRDPTGKAW AVLYIPNTRD RLSRGWCAFA  360
RGNCLEEGDY CVFELVAAGE FRVHIFRVVE PPVPAVRLRR VTVSV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G25220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032291e-152AP003229.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0022F10.
GenBankAP0149571e-152AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614236.10.0B3 domain-containing protein Os01g0723500
SwissprotQ8S2E60.0Y1235_ORYSJ; B3 domain-containing protein Os01g0723500
TrEMBLA0A0D9V5490.0A0A0D9V549_9ORYZ; Uncharacterized protein
STRINGLPERR01G25220.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127923135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-13related to vernalization1 1