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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR01G24170.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
bHLH |
Protein Properties |
Length: 469aa MW: 50057.7 Da PI: 7.7422 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR01G24170.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 41.5 | 2.4e-13 | 323 | 369 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
+h e+Er+RR+++N++f Lr ++Pk + K++Ka+ L A+ YI++L+
LPERR01G24170.1 323 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIQELE 369
799***********************66......****************996 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 469 aa
Download sequence Send
to blast |
MSRSETDAAL FAAVLGHDAA HYLATTPPHL DAPEESASTA ELLARLHDLV ERQGGAWTYG 60 IFWQESRGVL GWGDGHCRDG AVAAGPGEQL GAAAERSVAR KRVLLRLHAL YGGGDDEGAD 120 YALRLDRVTG AEMYFLASMY FSFPEGAGGP GRALATGRHA WAEVDPHPSS GPGWYVRSSL 180 ARSAGLRTVV FLPCKGGVLE LGSLVAFHET PEVLRAIQSA LCAEPAAPPE DFMRIFGKDL 240 SRGAVPMQPS TGCDAPWTPR LVVHPTPAAR PAKRAAKPAE PPKNIDFSTK AANGQVQAAG 300 GGEERRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPKIS KMDKASLLSD 360 AIAYIQELEA RLRGGAGAAV PAARPAVEVK AMQDEVVLRV TTPLDEHPIS GVFHAMRDSQ 420 LSVVASDVAV SEDAVTHTLM VRSPGPERLT AETVLAAMSR GVSVTTPSP
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 1e-25 | 317 | 405 | 2 | 83 | Transcription factor MYC2 |
5gnj_B | 1e-25 | 317 | 405 | 2 | 83 | Transcription factor MYC2 |
5gnj_E | 1e-25 | 317 | 405 | 2 | 83 | Transcription factor MYC2 |
5gnj_F | 1e-25 | 317 | 405 | 2 | 83 | Transcription factor MYC2 |
5gnj_G | 1e-25 | 317 | 405 | 2 | 83 | Transcription factor MYC2 |
5gnj_I | 1e-25 | 317 | 405 | 2 | 83 | Transcription factor MYC2 |
5gnj_M | 1e-25 | 317 | 405 | 2 | 83 | Transcription factor MYC2 |
5gnj_N | 1e-25 | 317 | 405 | 2 | 83 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization
Signal ? help
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|
No. |
Start |
End |
Sequence |
1 | 304 | 312 | RRPRKRGRK |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |