PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G24090.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 725aa    MW: 81340.1 Da    PI: 9.0533
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G24090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.84.9e-19411211398
                      TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +g +++p kfa++++g      ++ l+++ g++W++ +   +++ + +++++GWkeFv+an+++egD +vF+++g s+f   v vf+
  LPERR01G24090.1  41 TGSMMVPTKFANNFNGH--IYEEVNLKSPGGKTWTIGV--ANSGTGeVIFQSGWKEFVDANNIQEGDCLVFRYSGVSSF--DVLVFD 121
                      46799******888655..4458***************..5544445***************************99999..888877 PP
2B337.54.1e-122643331485
                      T-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3  14 grlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                      + ++++ +fa+++ g ++    +++le  ++  +W v++  r+  ++ + ++GW++F+++n+L   D+++F+l+
  LPERR01G24090.1 264 SFISVSSEFAAKYlGAVE---NEVVLERaTRRGKWHVQFM-RRENNSGFAGTGWRQFAHDNDLIGHDVCLFELM 333
                      557999*******76663...369999967779******5.55555566899********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-2426125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-2427127IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.87529123IPR003340B3 DNA binding domain
CDDcd100178.19E-2030121No hitNo description
SMARTSM010193.8E-1332123IPR003340B3 DNA binding domain
PfamPF023625.4E-1641119IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-14242333IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-16242355IPR015300DNA-binding pseudobarrel domain
CDDcd100171.35E-11246336No hitNo description
SMARTSM010190.021248344IPR003340B3 DNA binding domain
PROSITE profilePS508639.953251349IPR003340B3 DNA binding domain
PfamPF023622.0E-9265333IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MGMLKLGKNC SACKEWQEHC YWSHMADDKK HFVKHMVGDF TGSMMVPTKF ANNFNGHIYE  60
EVNLKSPGGK TWTIGVANSG TGEVIFQSGW KEFVDANNIQ EGDCLVFRYS GVSSFDVLVF  120
DPSGCEKASL HFDENNAHGR TEKSAGADEG GHVDNCYHRY LEMTLHKNSG RSIPRACKRD  180
LFSDEIKQDQ CQEKENVGED EDEDLVAAAE DKYYFCKNGP VIEYRLTADD KAEISSVRVP  240
VEPGNPVFVQ LIHPSHVRGT RGYSFISVSS EFAAKYLGAV ENEVVLERAT RRGKWHVQFM  300
RRENNSGFAG TGWRQFAHDN DLIGHDVCLF ELMMMNEAGD RRRNRRRPKM AVHVLRKFRL  360
SSQMHAKKQS EPIERWNCSP SVPLAFAFRG PRPRTCHRAV KSRPGNAKAT VGVGRHALRR  420
YGNHDGRFHI KRITSFAAMD KQVPIVSPTT DALPVEETNN STGDASGSSY FTERGIGKPG  480
FVTFQGGSSQ MKSVESVPHP GKEASRLVWF VGPTTLVAFL VLPSLYLRKV LSAVFEDSLL  540
TDFLILFFTE ALFYGGVAIF VLLIDKVWRP LQQVAPKSYI WSKSRFFRIS SVTTMVFSLM  600
IPLLTMGMVW PWTGPAASAT LAPYLVGLVV QFAFEQYARH RKSPSWPVIP IIFKIYRLHQ  660
LNRAAQLVTA LTFSVRGTEA TNQTLAIMNS LGALLTVLQI LGVICVWSLS SFLMRFLPSS  720
DIPDP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339347DRRRNRRRP
2341346RRNRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G24090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2417060.0AK241706.1 Oryza sativa Japonica Group cDNA, clone: J065196O17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627511.10.0uncharacterized protein LOC4324250
SwissprotQ10GM31e-161Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBLA0A0D9V4N90.0A0A0D9V4N9_9ORYZ; Uncharacterized protein
STRINGLPERR01G24090.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-30B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]